Factsheet for PGSC0003DMT400065015

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g086720.2.1	Tomato	cytosol	94.62	97.06
KRH13902	Soybean	mitochondrion	58.65	80.74
KRH43469	Soybean	mitochondrion	58.21	80.02
PGSC0003DMT400046026	Potato	cytosol	54.98	77.5
PGSC0003DMT400029745	Potato	cytosol	50.49	72.83
PGSC0003DMT400060959	Potato	cytosol	49.69	72.23
PGSC0003DMT400060862	Potato	cytosol	49.69	71.67
VIT_13s0064g01380.t01	Wine grape	cytosol	70.76	71.27
KRH36455	Soybean	cytosol	73.18	69.15
KRH27512	Soybean	cytosol	72.56	68.56
CDX86328	Canola	cytosol	61.88	67.71
AT5G48060.1	Thale cress	cytosol	62.6	67.37
Bra037512.1-P	Field mustard	cytosol	62.87	65.88
PGSC0003DMT400011904	Potato	cytosol	44.57	64.46
PGSC0003DMT400055029	Potato	cytosol	43.77	63.54
PGSC0003DMT400011903	Potato	cytosol	31.75	62.77
PGSC0003DMT400087204	Potato	cytosol	42.6	58.5
PGSC0003DMT400030931	Potato	mitochondrion	9.15	57.95
PGSC0003DMT400014804	Potato	cytosol	51.57	57.44
PGSC0003DMT400000108	Potato	cytosol	50.13	55.4
PGSC0003DMT400013490	Potato	cytosol	26.64	55.1
PGSC0003DMT400025225	Potato	cytosol	48.97	54.06
PGSC0003DMT400023971	Potato	cytosol	49.51	53.8
PGSC0003DMT400089685	Potato	cytosol	49.51	53.8
PGSC0003DMT400065217	Potato	cytosol	43.05	45.85
PGSC0003DMT400054936	Potato	cytosol	40.27	44.59
PGSC0003DMT400045958	Potato	cytosol	39.01	43.72
PGSC0003DMT400088288	Potato	cytosol	39.46	43.65

Protein Annotations

EntrezGene:102579957	Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR035892	UniProt:M1CD95	PFAM:PF00168
PFAM:PF08372	EnsemblPlantsGene:PGSC0003DMG400025256	PGSC:PGSC0003DMG400025256	EnsemblPlants:PGSC0003DMT400065015	InterPro:PRibTrfase_C	PFscan:PS50004
PANTHER:PTHR10024	PANTHER:PTHR10024:SF201	SMART:SM00239	SUPFAM:SSF49562	TMHMM:TMhelix	UniParc:UPI00029648BF
RefSeq:XP_015160385.1	SEG:seg	:	:	:	:

Description

Synaptotagmin [Source:PGSC_GENE;Acc:PGSC0003DMG400025256]

Coordinates

chr1:+:66371104..66374451

Molecular Weight (calculated)

128212.0 Da

IEP (calculated)

9.250

GRAVY (calculated)

-0.441

Length

1115 amino acids

Sequence
(BLAST)

0001: MKLIVEVIDA YDLMPKDGEG SVSAFVEVDF ENQLSKTRTV PKNLNPTWNH KLIFHLDDIK NHRYKYIDVS VYHERRPIPG RNFLGRVRIP CSNIVKKGEE
0101: VYQRFQLEKK WFSSFVKGEI GLKIYISSPS DPNLYPKKSS IQPTPKSSSP SNIPSIENPE HLDNPPPSLP ASEDSSLDTP KASKSSEVQK TENTAISAAD
0201: QSSSFAVVEK TGHLTPSEQA TESVEHIEER SQFVFKHQAM QQPVISIRKR PGFQPTMQHQ VDHPRAIHSQ PGVQLPMQHQ VDHPRAIHSQ PGVQLPMQHQ
0301: VDHPRAIHGQ PGVQLPMQYQ VDQPRTMHNH PKDDYELKDT NPQLGEQWPR GGGYGGRGWM NSDRHASTYD LVEQMFYLYV RVVKSKDLQP SVLTGSCDPY
0401: VEVKMGNYKG RTKHFDKKMN PEWNQVFAFS KDRIQSSVLE VYVKDKDMMG RDDNFGRVVF DLNEVPTRVP PDSPLAPQWY RLEDRRGERK VTGEIMLAVW
0501: MGTQADEAFS DAWHADAAFV HGEGVMSVRS KVYVSPKLWY LRVNVIEAQD IIPNDQSRLP EVFVKAQVGN QVLKTDICPA RTANPMWNED LVFVAAEPFE
0601: EQLVLSIEDR VHPMKDEILG KISFPLNTFE KRLDHRPVHS RWFNLEKFGF GSLEVDRRKE LKFSSRVHLR VCLEGGYHVL DESTMYISDQ RPTARQLWKP
0701: PVGILEVGIL GAEGLLPMKM KDSRGSTDAY CVAKYGQKWV RTRTILDTFS PKWNEQYTWE VYDPSTVITL GVFDNCHLGV EKQGTGAARD SRIGKVRIRL
0801: STLESHRIYT HSYPLLVLHP SGVKKMGELQ LAVRFTSLSL ANMIHTYGHP LLPKMHYLHP FTVNQVDNLR YQAMSIVAVR LARAEPPLRK EVVEYMLDVD
0901: SHMWSMRRSK ANFFRIMSLL SGLISVNRWF GDICHWKNPV TSVLVHILFL ILIWYPELIL PTLFLYMFLI GLWNYRFRPR HPPHMDTKLS WAETAHPDEL
1001: DEEFDTFPTS RPHDIVRMRY DRLRSVAGRI QTVVGDIATQ GERLQGVLSW RDPRATSLFI MFSLFAAVML YATPFRVVAL VAGLYMLRHP RFRSKMPPVP
1101: SNFFKRLPAR TDSML

Best Arabidopsis Sequence Match ( AT5G48060.1 )
(BLAST)

0001: MRNTTKLVVH VVDAQYLMPR DGQGSASPFV EVDFLNQLSK TRTVPKSLNP VWNQKLYFDY DQSVINQHNQ HIEVSVYHER RPIPGRSFLG RVKISLCNIV
0101: YKDDQVYQRF TLEKKWLLSS VKGEIGLKFY ISSSEEDQTF PLPSKPYTSP TQASASGTEE DTADSETEDS LKSFASAEEE DLADSVSECV EGKKSEEVKE
0201: PVQKLHRQEV FARPAPMQSI RLRSRENPHE AQKPMSRGAN QLHPQNPNHL QSYGDTDLDD FKVKDMNLDL GERWPNPNAG ERFTGTYDLV EQMFYLYVRV
0301: VKAKELPPGS ITGGCDPYVE VKLGNYKGRT KIFDRKTTIP EWNQVFAFTK ERIQSSVLEV FVKDKETLGR DDILGKVVFD LNEIPTRVPP NSPLAPQWYR
0401: LEDWRGEGKV VRGEIMLAVW MGTQADEAFP EAWHADSASV HGEGVFNIRS KVYVSPKLWY LRVNVIEAQD MIPSDRNRLP DVFVKASVGM QTLKTSICSI
0501: KTTNPLWKED LVFVVAEPFE EQLVISVEDR VHTSKDEVIG KITLPMNVFE KRLDHRPVHS RWFNLDKYGT GVLEPDARRK EHKFSSRIHL RICLEGGYHV
0601: MDESTMYISD TRPTARQLWK QPVGMLEIGI LGANGLVPMK LKDGRGSTNA YCVAKYGQKW VRTRTILDTL SPRWNEQYTW EVYDPCTVIT LGVFDNSHLG
0701: SAQSGTADSR DARIGKVRIR LSTLEAHKIY THSFPLLVLQ PHGLKKTGDL QISVRFTTLS LANIIYNYGH PLLPKMHYLF PFTVNQVDGL RYQAMNIVST
0801: RLGRAEPPLR KEVVEYMLDV DSHLWSMRRS KANFFRIMSL LSGYFLVGKW LEDVCNWRYP VTSVLVNVLF FILVMYPELI LPTMFLYMFF IGLWNFRSRP
0901: RHPPHMDMKL SWAEAVGPDE LDEEFDTFPT SRSQELVRLR YDRLRSVAGR IQTVVGDIAA QGERIQSLLS WRDPRATSLF ILFCLAASVV LYAMPFKAIA
1001: LASGLYYLRH PKFRSKLPSL PSNFFKRLPS STDSLL

Arabidopsis Description

C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9FI32]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.