Factsheet for PGSC0003DMT400087204

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g086700.2.1	Tomato	cytosol	94.7	96.12
PGSC0003DMT400060959	Potato	cytosol	64.53	68.32
PGSC0003DMT400060862	Potato	cytosol	64.9	68.18
PGSC0003DMT400029745	Potato	cytosol	64.78	68.05
Os05t0370600-01	Rice	plastid	63.18	66.28
EER90047	Sorghum	cytosol	62.93	65.94
TraesCS5A01G265400.1	Wheat	cytosol	62.81	65.89
Zm00001d046749_P001	Maize	mitochondrion	62.81	65.81
HORVU5Hr1G073350.1	Barley	cytosol	62.68	65.76
TraesCS5B01G265100.1	Wheat	cytosol	62.68	65.76
TraesCS5D01G273300.1	Wheat	cytosol	62.68	65.76
Zm00001d036801_P001	Maize	plasma membrane	62.19	65.25
HORVU5Hr1G053320.2	Barley	cytosol	60.59	63.81
TraesCS5B01G171600.1	Wheat	cytosol	60.47	63.68
TraesCS5D01G178600.1	Wheat	cytosol	60.1	63.29
PGSC0003DMT400055029	Potato	cytosol	57.51	60.81
PGSC0003DMT400011903	Potato	cytosol	42.0	60.46
PGSC0003DMT400011904	Potato	cytosol	57.39	60.44
VIT_13s0064g01400.t01	Wine grape	cytosol	58.13	59.6
TraesCS5A01G174100.1	Wheat	cytosol	55.17	58.72
PGSC0003DMT400046026	Potato	cytosol	55.3	56.76
Bra027570.1-P	Field mustard	cytosol	53.08	56.71
KRH48448	Soybean	cytosol	48.15	55.23
KRH39245	Soybean	cytosol	50.12	54.27
AT4G20080.1	Thale cress	cytosol	51.72	54.26
PGSC0003DMT400013490	Potato	cytosol	35.47	53.43
CDY49185	Canola	cytosol	21.8	52.68
CDY13087	Canola	cytosol	29.43	52.18
CDY57334	Canola	cytosol	26.97	49.55
KRH43466	Soybean	plasma membrane	13.67	49.33
AT5G44760.1	Thale cress	cytosol	28.57	48.54
PGSC0003DMT400014804	Potato	cytosol	57.88	46.95
PGSC0003DMT400000108	Potato	cytosol	57.88	46.58
PGSC0003DMT400023971	Potato	cytosol	55.42	43.86
PGSC0003DMT400089685	Potato	cytosol	55.42	43.86
PGSC0003DMT400030931	Potato	mitochondrion	9.48	43.75
KRH15602	Soybean	plasma membrane	41.5	43.48
PGSC0003DMT400065015	Potato	cytosol	58.5	42.6
PGSC0003DMT400025225	Potato	cytosol	52.59	42.28
PGSC0003DMT400054936	Potato	cytosol	44.21	35.65
PGSC0003DMT400065217	Potato	cytosol	45.94	35.63
PGSC0003DMT400045958	Potato	cytosol	42.86	34.97
PGSC0003DMT400088288	Potato	cytosol	43.23	34.82

Protein Annotations

EntrezGene:102584388	Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	ncoils:Coil
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR035892	UniProt:M1DDC6
PFAM:PF00168	PFAM:PF08372	EnsemblPlantsGene:PGSC0003DMG400036775	PGSC:PGSC0003DMG400036775	EnsemblPlants:PGSC0003DMT400087204	InterPro:PRibTrfase_C
PFscan:PS50004	PANTHER:PTHR10024	PANTHER:PTHR10024:SF226	SMART:SM00239	SUPFAM:SSF49562	TMHMM:TMhelix
UniParc:UPI0002962158	RefSeq:XP_006366512.1	SEG:seg	:	:	:

Description

C2 domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400036775]

Coordinates

chr1:-:66393564..66396002

Molecular Weight (calculated)

93119.3 Da

IEP (calculated)

9.451

GRAVY (calculated)

-0.326

Length

812 amino acids

Sequence
(BLAST)

001: MSNQKKNQNQ NPSKNQNANQ NQNKNQYLNQ NHNSYPLENE DFNLKETKPT LGGGRVTAND RLGTAFDLVE QMHYLYVRVV KAKDIPFKKD GNSNPHPFVE
101: VQLGNLKGLT FHFEHKSSPE WSQVFVVLKD RIQSRVLEVC LKDKSRIGDS DDALIGKVNF EINEVPKRVP PDSPLAPQWY WMENRKGEKV KGELMLAVWI
201: GTQADEAFQE ALHLDATAVN GDGVANIKSK VYLSPRLWYL RVNVIEAQEL QIGNKNRLQP EIYARITLGN VVLRTKNSLS KNVCPSWNED LMFVVAEPFE
301: DQLVLSVEDK VAPNKDELLG KCVISLQDVE KRVDFSTPIS KWYGLEKEVV SEGGNSKVSK LNSKVHLRLS FDGGYHVLDE LTHYSSDLKA TSKELWKPSI
401: GVLELGILNA QGLSPMKNRD GRGITDPYCV AKYGQKWIRT RTIINSFNPN WNEQYTWEVF DPCTVITIGV FDNCHLQGED KNDKAKDSKI GKVRIRLSTL
501: ETNRVYTHSY PLIVLTPAGV KKMGEIQLAV RFSCSSLFNM LAMYSQPLLP TLHYLHPLTY YQIDNLRHQA TQIVATRLSR AEPPLRRELV EYMLDVGSNT
601: WSIRRCKANY VRIAGILTGL IAICKWFNGI CTWKNPFTTV LVHIIFFLFV CFPRLILSSM FVVVFFIGTW NYRMRPRKPP HMDIKLSQAE RVPWDELDEE
701: FDTFPTSRNN DAVRMRYDRL RSIGSRMQAV AGDLANQGER FYNLLTWRDP RATALFLIFC LVASVVLYVT PFTVLVSLMG FYTMRHPKFR EKLPSVPLSF
801: FRRLPAKTDS LL

Best Arabidopsis Sequence Match ( AT1G51570.1 )
(BLAST)

001: MQRPPPEDFS LKETKPHLGG GKVTGDKLTT TYDLVEQMQY LYVRVVKAKE LPGKDLTGSC DPYVEVKLGN YRGTTRHFEK KSNPEWNQVF AFSKDRVQAS
101: YLEATVKDKD LVKDDLIGRV VFDLNEIPKR VPPDSPLAPQ WYRLEDGKGQ KVKGELMLAV WFGTQADEAF PEAWHSDAAT VSGTDALANI RSKVYLSPKL
201: WYLRVNVIEA QDLIPSDKGR YPEVFVKVIM GNQALRTRVS QSRSINPMWN EDLMFVVAEP FEEPLILSVE DRVAPNKDEV LGRCAVPLQY LDKRFDYRPV
301: NSRWFNLEKH VIMEGGEKKE IKFASKIHMR ICLEGGYHVL DESTHYSSDL RPTAKQLWKP NIGVLELGVL NATGLMPMKA KEGGRGTTDA YCVAKYGQKW
401: IRTRTIIDSF TPRWNEQYTW EVFDPCTVVT VGVFDNCHLH GGDKNNGGGK DSRIGKVRIR LSTLEADRVY THSYPLLVLH PSGVKKMGEI HLAVRFTCSS
501: LLNMMYMYSM PLLPKMHYLH PLTVSQLDNL RHQATQIVST RLTRAEPPLR KEVVEYMLDV GSHMWSMRRS KANFFRIMGV LSGIIAVGKW FEQICVWKNP
601: ITTVLIHILF IILVIYPELI LPTIFLYLFL IGVWYYRWRP RHPPHMDTRL SHADSAHPDE LDEEFDTFPT SRPSDIVRMR YDRLRSIAGR IQTVVGDLAT
701: QGERFQSLLS WRDPRATALF VLFCLIAAVI LYITPFQVVA FAIGLYVLRH PRLRYKLPSV PLNFFRRLPA RTDCML

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8H3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.