Factsheet for PGSC0003DMT400025225

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g064230.1.1	Tomato	cytosol	97.92	97.92
VIT_07s0005g04770.t01	Wine grape	cytosol	76.14	75.99
CDY10076	Canola	cytosol, nucleus, plasma membrane	64.16	66.46
Bra032527.1-P	Field mustard	cytosol	64.65	66.29
CDY32530	Canola	cytosol	64.36	65.72
GSMUA_Achr3P14580_001	Banana	cytosol	45.94	65.44
PGSC0003DMT400029745	Potato	cytosol	49.01	64.04
AT1G04150.1	Thale cress	cytosol	63.76	63.64
PGSC0003DMT400060959	Potato	cytosol	48.22	63.49
PGSC0003DMT400060862	Potato	cytosol	47.82	62.48
Os02t0816000-01	Rice	cytosol	61.19	61.86
TraesCS6D01G371600.1	Wheat	cytosol	60.4	60.58
TraesCS6A01G386900.1	Wheat	cytosol	60.3	60.24
TraesCS6B01G426600.1	Wheat	cytosol	60.2	60.14
HORVU6Hr1G090330.2	Barley	cytosol	60.4	60.1
HORVU6Hr1G090200.1	Barley	cytosol	60.4	60.1
Zm00001d018473_P001	Maize	cytosol	59.6	59.9
EES07745	Sorghum	cytosol	59.9	59.66
PGSC0003DMT400046026	Potato	cytosol	45.64	58.28
PGSC0003DMT400055029	Potato	cytosol	44.16	58.07
PGSC0003DMT400011904	Potato	cytosol	43.86	57.46
PGSC0003DMT400011903	Potato	cytosol	31.68	56.74
PGSC0003DMT400087204	Potato	cytosol	42.28	52.59
PGSC0003DMT400013490	Potato	cytosol	28.02	52.5
PGSC0003DMT400014804	Potato	cytosol	51.29	51.75
PGSC0003DMT400000108	Potato	cytosol	51.09	51.14
PGSC0003DMT400023971	Potato	cytosol	50.0	49.22
PGSC0003DMT400089685	Potato	cytosol	50.0	49.22
PGSC0003DMT400065015	Potato	cytosol	54.06	48.97
PGSC0003DMT400030931	Potato	mitochondrion	8.32	47.73
PGSC0003DMT400054936	Potato	cytosol	43.56	43.69
PGSC0003DMT400088288	Potato	cytosol	42.28	42.36
PGSC0003DMT400045958	Potato	cytosol	41.68	42.31
PGSC0003DMT400065217	Potato	cytosol	43.27	41.74

Protein Annotations

EntrezGene:102580755	Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR035892	UniProt:M1AL67	PFAM:PF00168
PFAM:PF08372	EnsemblPlantsGene:PGSC0003DMG400009746	PGSC:PGSC0003DMG400009746	EnsemblPlants:PGSC0003DMT400025225	InterPro:PRibTrfase_C	PFscan:PS50004
PANTHER:PTHR10024	PANTHER:PTHR10024:SF268	SMART:SM00239	SUPFAM:SSF49562	TMHMM:TMhelix	UniParc:UPI0002965AFE
RefSeq:XP_006350283.2	SEG:seg	:	:	:	:

Description

Synaptotagmin [Source:PGSC_GENE;Acc:PGSC0003DMG400009746]

Coordinates

chr9:+:45782473..45785641

Molecular Weight (calculated)

113739.0 Da

IEP (calculated)

9.771

GRAVY (calculated)

-0.270

Length

1010 amino acids

Sequence
(BLAST)

0001: MNNGKEKLVV EVVAAHNLIP KDGEGSSSPF VEVEFENQRQ RTQVKMRDLN PVWNEKLVFH VNDAADLPYR TIEVNVFNEK RSNTSRNFLG RARISGSSIA
0101: KEGEEIAQLY TLDKRSLFSH VRGELSLKIY LSTTEQVKQV ITDKGNAGGG GVVSSGAPNA KKNKKLQQQQ TNGTNMVVQM GQENKVNFQN QNHSKPVESV
0201: PGDIKPVVIT SAPGPIIPAG TGGGGHGGGG VGLYTSGQGE FSLKETSPHL GGKDKTSSTY DLVEQMQYLY VRVVKAKDFS VFGVGGGGEL VAEVKLGNYR
0301: GITKRVFSNH AEWDQVFAFS KDSVQSSVVE VFVKENNKDD FLGRVWFDLN EVPKRVPPDS QLAPQWYRME DKKGDKSKGG ELMVAIWFGT QADEAFAEAW
0401: HSKAANVHFD GLCSIKSKVY LSPKLWYLRV GVIEAQDIVM GEKGSSIMRY PELFAKVQVG NQVLRTRVSP PAATRSFTNP FWNEDLMFVV AEPFEDFLLV
0501: SIEDRLAPNR EEVVARVLLP VSSLERRLNE KPVTSRWFNL DTHLSNANDP KAVVRFASRI HLRASLDGGY HVLDEATMYS SDVRPTAKQL WKPHIGVLEV
0601: GVLGATNLVP MKMKEGKGGS VDAYCVAKYG QKWVRTRTVV DSLSPKWNEQ YTWEVFDPCT VITIGVFDNS RVDKNMANPA AGNRDSRIGK VRIRLSTLES
0701: DRVYTHAYPL LMLHPSGVKK MGELHLAVRF SCANMVNMLH MYTMPLLPKM HYVQPLSVSQ LDSLRHQAMN VVATRLSRSE PPLGREVVEY MLDHDSHMWS
0801: MRKSKANFFR LTNVVSWFVI MSRFLESARN WHKPVHSALA LIAFTILVLV PELIIPCVLL NLAAVGLWRY RSRPRHPPHM DTRLSYAESV YPDELDEEFD
0901: SFPTSRNAEI VRMRYDRLRS VAGRIQTVVG DMATQGERFQ ALLSWRDPRA TFLFVIFCFF AAFGFYLVPI KWVVALWGLY YLRPPRFRNR LPSSAVCFLK
1001: RLPTRADSML

Best Arabidopsis Sequence Match ( AT1G04150.1 )
(BLAST)

0001: MTEAKTGTGN ERLVVEIVGA HNLMPKDGED SSSPFVEVQF ENQRLRTKVK PKDLNPIWNE KLVFHVIDVN DLRHKALEIN VYNEKRSSNS RNFLGKVRVL
0101: GSSVGREGES VVQLYTLEKR SLFSSVRGEI SVKHYMTTTA ENGENVRRVN RSGGSKKSKK VQNVSSSMAI QQQQQQQQQQ ISLHNHNRGN QQQSQQNGQG
0201: QRMLPFYPHQ SEIKPLVITA LPSPMPGPGP RPIVYSNGSS EFSLKETKPC LGGTSNGLGG LSSHKDKTSS TYDLVEQMQY LYVNIVKAKD LSVLGEVVSE
0301: VKLGNYRGVT KKVSSNSSNP EWNQVFVFSK ERIQSSVVEL FVKEGNKDEY TGRVLFDLSE IPTRVPPDSP LAPQWYKIEN RNGGRGNGEL MVSVWFGTQA
0401: DEAFAEAWHS KAGNVHIEEL SSIKSKVYLS PKLWYLRISV IEAQDVAIMD KGSSLMRFPE LSAKLQVGSQ ILRTAIASAI PTKSFSNPYW NEDLMFVVAE
0501: PFEDCVTVVV EDRLNGGAIG GQNDVAVGRV QIPISAVERR TGDTLVGSRW FSLDNGNNNN RFGSRIHLRL SLDGGYHVLD EATMYNSDVR PTAKELWKPQ
0601: VGLLEIGILS ATGLMPMKVR DGKCGGIADS YCVAKYGPKW VRTRTVVDSL CPKWNEQYTW EVYDPCTVVT VGVFDNARVN ENNNSRDVRI GKVRIRLSTL
0701: ETGRVYTHSY PLIVLHPSGV KKTGELHLAV RLSCGNAVNM LHMYALPLLP KMHYTQPLGV HMLERLRYQT LNAVAARLSR AEPPLGREVV EYMLDHDFHV
0801: WSMRRSKANF FRLVNVISGL VAVAKLVEVM RSWSKPVYST VFVLAFLFMV LFPELLLPCL LLYTAAVGVW RFRRRSRYPP HMDARISHAE TVFPDELDEE
0901: FDTFPTSRGF DVVRMRYDRV RSIAGRVQTV VGDMASQGER VQALLSWRDP RATFLFLMFC LLAAVGFYTV PVKLTVAISG LYYLRPPRFR RKLPSRGLSF
1001: FRRLPSRADS LL

Arabidopsis Description

C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:O64492]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.