Factsheet for PGSC0003DMT400055029

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g006620.2.1	Tomato	cytosol	96.74	96.74
AT5G12970.1	Thale cress	cytosol	70.7	70.61
CDX97214	Canola	cytosol	70.18	70.09
Bra006172.1-P	Field mustard	cytosol	70.05	69.96
Bra008867.1-P	Field mustard	cytosol	70.05	69.96
CDX78498	Canola	cytosol	70.05	69.96
CDY68091	Canola	cytosol	70.05	69.96
KRH29670	Soybean	cytosol	70.7	69.88
CDX70485	Canola	cytosol	69.92	69.83
PGSC0003DMT400060959	Potato	cytosol	69.66	69.75
KRH23178	Soybean	cytosol	70.31	69.68
PGSC0003DMT400060862	Potato	cytosol	70.05	69.6
KRH10160	Soybean	cytosol	70.05	69.51
PGSC0003DMT400029745	Potato	cytosol	69.92	69.47
EER90047	Sorghum	cytosol	69.27	68.65
Os05t0370600-01	Rice	plastid	69.14	68.6
TraesCS5D01G273300.1	Wheat	cytosol	69.01	68.48
TraesCS5B01G265100.1	Wheat	cytosol	69.01	68.48
TraesCS5A01G265400.1	Wheat	cytosol	69.01	68.48
HORVU5Hr1G073350.1	Barley	cytosol	69.01	68.48
Zm00001d036801_P001	Maize	plasma membrane	68.88	68.35
Zm00001d046749_P001	Maize	mitochondrion	68.88	68.26
VIT_06s0004g01550.t01	Wine grape	cytosol, peroxisome, plasma membrane	67.71	67.89
TraesCS5B01G171600.1	Wheat	cytosol	65.36	65.11
TraesCS5D01G178600.1	Wheat	cytosol	65.23	64.98
HORVU5Hr1G053320.2	Barley	cytosol	65.23	64.98
PGSC0003DMT400011904	Potato	cytosol	61.46	61.22
TraesCS5A01G174100.1	Wheat	cytosol	60.29	60.68
PGSC0003DMT400046026	Potato	cytosol	62.11	60.3
PGSC0003DMT400011903	Potato	cytosol	43.23	58.87
PGSC0003DMT400087204	Potato	cytosol	60.81	57.51
PGSC0003DMT400013490	Potato	cytosol	38.28	54.55
PGSC0003DMT400030931	Potato	mitochondrion	11.46	50.0
PGSC0003DMT400014804	Potato	cytosol	62.76	48.15
PGSC0003DMT400000108	Potato	cytosol	62.37	47.47
PGSC0003DMT400089685	Potato	cytosol	59.11	44.25
PGSC0003DMT400023971	Potato	cytosol	59.11	44.25
PGSC0003DMT400025225	Potato	cytosol	58.07	44.16
PGSC0003DMT400065015	Potato	cytosol	63.54	43.77
PGSC0003DMT400054936	Potato	cytosol	47.53	36.25
PGSC0003DMT400065217	Potato	cytosol	47.92	35.15
PGSC0003DMT400045958	Potato	cytosol	44.14	34.07
PGSC0003DMT400088288	Potato	cytosol	44.4	33.83

Protein Annotations

EntrezGene:102589659	Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0005575
GO:GO:0009506	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR035892	UniProt:M1BX85
PFAM:PF00168	PFAM:PF08372	EnsemblPlantsGene:PGSC0003DMG400021350	PGSC:PGSC0003DMG400021350	EnsemblPlants:PGSC0003DMT400055029	InterPro:PRibTrfase_C
PFscan:PS50004	PANTHER:PTHR31425	PANTHER:PTHR31425:SF6	SMART:SM00239	SUPFAM:SSF49562	TMHMM:TMhelix
UniParc:UPI000295A52C	RefSeq:XP_006348415.1	SEG:seg	:	:	:

Description

C2 domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021350]

Coordinates

chr1:-:2426521..2429020

Molecular Weight (calculated)

87752.0 Da

IEP (calculated)

9.154

GRAVY (calculated)

-0.116

Length

768 amino acids

Sequence
(BLAST)

001: MQKGSIHEEF ALKQTAPKIV GSGVMIGGDK VTVAYDLVEQ MEYLYVRVVK AKELTKDVTG SCDPYVEVKV GNYKGITKHF EKKINPEWNY VFAFSQDRLQ
101: ASYIEVCVKD KDVVLDDMIG RVVFDLVDVP RRVPPDSSLA PQWYRLEDKR GEKLKKGEIM LAVWRGTQAD EAFCDAWHSD AAAVGSEGIS RIRGKVYLSP
201: RLWYIRVNVI ECQDLLPSEK NRQPECCVKV MCGNQVLKTK ISPIKSCNPM WNEDLVFVVA EPFEEPLVIT VEDKVGSNFE FLGKCVLPLS IVPRRLDNKP
301: VPSKWHNLEK HTVVEGEKKE TKFASKIHMR LSLDGGYHVL DESIHYSSDF KPTSKLLWRS SIGLLELGII SATGLSAMKS KDGRGTTDAY CVAKYGPKWV
401: RTRTIIDSLS PQWNEQYTWE VHDPCTVITV GVFDNGYLQG GKCTSIGKVR IRLSTLETEK VYTHSYPLIV LHPSGVKKMG EVQLAVRFSC TSYVNMLSKY
501: TQPLFPKMHY AHPMSISQQD FLRFQTIQIL STRLGRAEPP LKKEVVDYML DAGSHIWSIR RAKANFFRLI YVVSPILAIG KWFDQICHWK NPLTTILIHI
601: LFVILVLYPE LIVPTFFVYL FLIGIWHYRL KPRHPPHMDI HISHAHGVFP DDLDEEFDTF PTSRGSDKVR MRYDRLRSIG GRIQTVIGDL ATQGERLHSL
701: LSWRDPRASA LFVTFCLFAA IVMYVTPFQV VALLIGIYVL RHPRFRHKLP PLSTSFFKRL PARADCML

Best Arabidopsis Sequence Match ( AT1G51570.1 )
(BLAST)

001: MQRPPPEDFS LKETKPHLGG GKVTGDKLTT TYDLVEQMQY LYVRVVKAKE LPGKDLTGSC DPYVEVKLGN YRGTTRHFEK KSNPEWNQVF AFSKDRVQAS
101: YLEATVKDKD LVKDDLIGRV VFDLNEIPKR VPPDSPLAPQ WYRLEDGKGQ KVKGELMLAV WFGTQADEAF PEAWHSDAAT VSGTDALANI RSKVYLSPKL
201: WYLRVNVIEA QDLIPSDKGR YPEVFVKVIM GNQALRTRVS QSRSINPMWN EDLMFVVAEP FEEPLILSVE DRVAPNKDEV LGRCAVPLQY LDKRFDYRPV
301: NSRWFNLEKH VIMEGGEKKE IKFASKIHMR ICLEGGYHVL DESTHYSSDL RPTAKQLWKP NIGVLELGVL NATGLMPMKA KEGGRGTTDA YCVAKYGQKW
401: IRTRTIIDSF TPRWNEQYTW EVFDPCTVVT VGVFDNCHLH GGDKNNGGGK DSRIGKVRIR LSTLEADRVY THSYPLLVLH PSGVKKMGEI HLAVRFTCSS
501: LLNMMYMYSM PLLPKMHYLH PLTVSQLDNL RHQATQIVST RLTRAEPPLR KEVVEYMLDV GSHMWSMRRS KANFFRIMGV LSGIIAVGKW FEQICVWKNP
601: ITTVLIHILF IILVIYPELI LPTIFLYLFL IGVWYYRWRP RHPPHMDTRL SHADSAHPDE LDEEFDTFPT SRPSDIVRMR YDRLRSIAGR IQTVVGDLAT
701: QGERFQSLLS WRDPRATALF VLFCLIAAVI LYITPFQVVA FAIGLYVLRH PRLRYKLPSV PLNFFRRLPA RTDCML

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8H3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.