Factsheet for PGSC0003DMT400046026

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g077920.1.1	Tomato	cytosol	98.61	98.86
GSMUA_Achr1P16560_001	Banana	endoplasmic reticulum, plasma membrane	27.56	82.26
VIT_02s0087g00450.t01	Wine grape	extracellular	9.23	78.49
AT5G06850.1	Thale cress	cytosol	78.76	78.46
KRH71900	Soybean	endoplasmic reticulum	78.76	78.27
CDX81020	Canola	cytosol	39.44	78.2
KRH32998	Soybean	cytosol	78.76	78.17
Bra005915.1-P	Field mustard	cytosol	77.88	77.68
CDY70344	Canola	cytosol	49.43	77.58
GSMUA_Achr9P27720_001	Banana	mitochondrion	46.78	75.66
GSMUA_Achr1P16550_001	Banana	cytosol	32.49	75.37
Zm00001d036804_P001	Maize	cytosol	60.94	71.3
CDX81021	Canola	cytosol	25.79	71.08
EER90045	Sorghum	cytosol	72.57	70.6
TraesCS7B01G302900.1	Wheat	cytosol	71.18	69.33
TraesCS7A01G403500.1	Wheat	cytosol	71.05	69.13
HORVU7Hr1G094580.2	Barley	cytosol	71.18	69.0
TraesCS7D01G396900.1	Wheat	cytosol	70.8	68.8
Os06t0614000-01	Rice	cytosol	71.43	68.57
TraesCS7B01G481700.1	Wheat	cytosol	10.87	68.25
PGSC0003DMT400029745	Potato	cytosol	66.62	68.18
PGSC0003DMT400060959	Potato	cytosol	65.36	67.41
PGSC0003DMT400060862	Potato	cytosol	65.36	66.88
PGSC0003DMT400030931	Potato	mitochondrion	14.79	66.48
PGSC0003DMT400055029	Potato	cytosol	60.3	62.11
TraesCS2D01G333300.1	Wheat	cytosol	63.46	61.07
TraesCS2A01G329400.1	Wheat	cytosol	63.46	60.85
PGSC0003DMT400011904	Potato	cytosol	58.79	60.31
PGSC0003DMT400011903	Potato	cytosol	42.6	59.75
Zm00001d003321_P001	Maize	cytosol	62.07	56.89
KXG26530	Sorghum	cytosol	62.2	56.68
GSMUA_Achr3P11130_001	Banana	cytosol	51.2	56.49
Os04t0472900-01	Rice	cytosol	60.68	56.14
PGSC0003DMT400087204	Potato	cytosol	56.76	55.3
PGSC0003DMT400065015	Potato	cytosol	77.5	54.98
PGSC0003DMT400013490	Potato	cytosol	36.92	54.17
TraesCS2B01G352900.1	Wheat	mitochondrion	55.63	51.22
PGSC0003DMT400014804	Potato	cytosol	63.84	50.45
PGSC0003DMT400000108	Potato	cytosol	61.82	48.46
PGSC0003DMT400025225	Potato	cytosol	58.28	45.64
PGSC0003DMT400023971	Potato	cytosol	58.79	45.32
PGSC0003DMT400089685	Potato	cytosol	58.79	45.32
PGSC0003DMT400065217	Potato	cytosol	50.82	38.4
PGSC0003DMT400054936	Potato	cytosol	48.67	38.23
PGSC0003DMT400088288	Potato	cytosol	47.28	37.1
PGSC0003DMT400045958	Potato	cytosol	46.27	36.78
HORVU2Hr1G082010.3	Barley	cytosol	29.46	24.3

Protein Annotations

EntrezGene:102579380	Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0000003
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0007275	GO:GO:0008150	GO:GO:0008565
GO:GO:0009506	GO:GO:0009511	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009911
GO:GO:0010228	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0034613	GO:GO:0048574
InterPro:IPR000008	InterPro:IPR035892	UniProt:M1BIJ8	PFAM:PF00168	PFAM:PF08372	EnsemblPlantsGene:PGSC0003DMG400017857
PGSC:PGSC0003DMG400017857	EnsemblPlants:PGSC0003DMT400046026	InterPro:PRibTrfase_C	PFscan:PS50004	PANTHER:PTHR10024	PANTHER:PTHR10024:SF236
SMART:SM00239	SUPFAM:SSF49562	TMHMM:TMhelix	UniParc:UPI000294975D	RefSeq:XP_006342310.1	SEG:seg

Description

Synaptotagmin [Source:PGSC_GENE;Acc:PGSC0003DMG400017857]

Coordinates

chr3:-:18675550..18678494

Molecular Weight (calculated)

90937.3 Da

IEP (calculated)

9.393

GRAVY (calculated)

-0.282

Length

791 amino acids

Sequence
(BLAST)

001: MGNEQPSNPQ DDYKAKETKP QLGERWPHGG FRGGGGWISS DRVTSTYDLV EQMHFLYVRV VKARDLPPNP VTGSCDPYVE VKLGNYKGKT KHFDKKVNPE
101: WKQVFAFSKE KIQSSIIEVF VRDKEMVQRD DYLGKVVFDM NEVPTRVPPD SPLAPQWYRL EDRRGESKVR GEVMLAVWMG TQADEAFSEA WHADAALVHG
201: EGVHSVRSKV YVSPKLWYLR VNIIESQDVE SLDKSQPPQV FVKAQVGKQV LKTKVCQTRT TNPFWNEDLL FVAAEPFEEQ LVLTVECKAG PSKDEIAGRL
301: VLPLNTFEKR LDHRPVHSRW FNLERFGFGV LEGDRRHERK FSTRIHLRAC LEGGYHVLDE STMYISDQRP TARQLWKQPV GILEVGILSA QGLVPIKPKD
401: GRKTTDAYCV AKYGLKWVRT RTILDNLSPK WNEQYTWEVY DPCTVITLGV FDNGHLGENS GAAGKDSRIG KVRIRLSTLE TDRIYTMSYP LLVLQPSGVK
501: KMGELQLAFR FTCLSLANII YLYGHPLLPK MHYLHPFTVN QVDSLRYQAM NIVAVRLGRA EPPLHKEVVE YMLDVDSHMW SMRRSKANFF RIVSLFSGVI
601: SMSKWLGEVC KWKNPITTIL VHLLFCILIC YPELILPTMF LYMFLIGIWN YRSRPRQPQH MDTKLSWAEA VISDELDEEF DTFPTSKPEN TVKMRYDRLR
701: SVAGRIQTVI GDMATQGERF QALLSWRDPR ATSLFIVFCL IAAVILYVTP FKIIALVAAL LYLRHPKFRS KMPSPPCNFF RRLPARADSM L

Best Arabidopsis Sequence Match ( AT5G06850.1 )
(BLAST)

001: MAAKDGAKSQ EDYKLKDMKP ELGERWPHGG QRGGTGWIGS ERAASTYDLV EQMFYLYVRV VKAKDLPPNP VTSNCDPYVE VKIGNYKGKT KHFEKRTNPE
101: WNQVFAFSKD KVQSSTVEVF VRDKEMVTRD EYIGKVVFDM REVPTRVPPD SPLAPQWYRL EDRRGESKKR GEVMVAVWLG TQADEAFPDA WHSDASSVQG
201: EGVQSVRSKV YVSPKLWYLR VNVIEAQDVE PSDRSQPPQA FVKVQVGNQI LKTKLCPNKT TNPMWNEDLV FVAAEPFEEQ FFLTVENKVT PAKDEVMGRL
301: ISPLSVFEKR LDHRAVHSKW YNLEKFGFGA LEGDKRHELK FSSRIHLRVC LEGGYHVMDE STLYISDVKP TARQLWKSPI GILEVGILSA QGLSPMKTKD
401: GKATTDPYCV AKYGQKWVRT RTIIDSSSPK WNEQYTWEVY DPCTVITLGV FDNCHLGGSE KSNSGAKVDS RIGKVRIRLS TLEADRIYTH SYPLLVLQTK
501: GLKKMGEVQL AVRFTCLSLA HMIYLYGHPL LPKMHYLHPF TVNQLDSLRY QAMSIVAARL SRAEPPLRKE NVEYMLDVDS HMWSMRRSKA NFFRIVSVFA
601: GLIAMSKWLG DVCYWKNPLT TILFHVLFFI LICYPELILP TTFLYMFLIG LWNFRFRPRH PAHMDTKVSW AEAASPDELD EEFDTFPTSK GQDVVKMRYD
701: RLRSVAGRIQ MVVGDIATQG ERFQALLSWR DPRATCLFVI FCLVAAMILY VTPFKIIALA GGMFWMRHPK FRSKMPSAPS NFFRKLPSKA DCML

Arabidopsis Description

FTIP1FT-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.