Factsheet for PGSC0003DMT400047969

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111830.2.1	Tomato	nucleus	97.21	97.21
PGSC0003DMT400048727	Potato	endoplasmic reticulum, vacuole	83.24	83.47
VIT_18s0001g00810.t01	Wine grape	plasma membrane	82.4	81.94
KRH60980	Soybean	endoplasmic reticulum	81.28	80.61
KRH51652	Soybean	endoplasmic reticulum	81.56	80.44
AT1G20330.1	Thale cress	endoplasmic reticulum, golgi	81.01	80.33
Bra025811.1-P	Field mustard	extracellular, golgi	79.05	79.49
VIT_03s0038g02920.t01	Wine grape	extracellular	79.05	79.49
CDY71885	Canola	extracellular	78.49	78.93
CDX73228	Canola	endoplasmic reticulum, extracellular, plasma membrane	79.33	78.89
Bra015789.1-P	Field mustard	endoplasmic reticulum, extracellular	79.33	78.67
CDY51340	Canola	extracellular	78.21	78.65
CDX87642	Canola	endoplasmic reticulum, extracellular, plasma membrane	79.05	78.39
PGSC0003DMT400093662	Potato	cytosol	70.67	77.61
AT1G76090.1	Thale cress	endoplasmic reticulum, plasma membrane	77.37	77.16
GSMUA_Achr4P25540_001	Banana	cytosol	34.36	70.29
TraesCS4B01G332600.1	Wheat	endoplasmic reticulum, extracellular	70.95	69.78
TraesCS4D01G329300.1	Wheat	endoplasmic reticulum, extracellular	70.39	69.23
TraesCS5A01G503700.1	Wheat	endoplasmic reticulum, extracellular	70.39	69.04
Os03t0136200-01	Rice	extracellular	69.55	68.59
GSMUA_Achr4P29480_001	Banana	cytosol	34.08	68.54
EER95554	Sorghum	extracellular, golgi	70.11	68.39
Zm00001d048356_P001	Maize	plasma membrane	70.67	68.38
Zm00001d027548_P001	Maize	plasma membrane	70.67	68.19
TraesCS1B01G218300.1	Wheat	endoplasmic reticulum, extracellular	68.72	67.77
TraesCS1A01G204700.1	Wheat	endoplasmic reticulum, extracellular	68.72	67.77
TraesCS1D01G208000.1	Wheat	endoplasmic reticulum	68.44	67.49
HORVU1Hr1G052620.1	Barley	endoplasmic reticulum	68.44	67.49
HORVU4Hr1G080780.1	Barley	endoplasmic reticulum, extracellular	69.55	67.12
Zm00001d036295_P001	Maize	cytosol	24.58	65.19
Zm00001d020855_P001	Maize	cytosol	24.02	63.7
PGSC0003DMT400017668	Potato	cytosol	37.99	39.31
PGSC0003DMT400006168	Potato	cytosol	18.99	21.94

Protein Annotations

EntrezGene:102596628	Gene3D:3.40.50.150	MapMan:5.5.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0006694	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0016740
GO:GO:0032259	InterPro:IPR030384	UniProt:M1BLQ0	InterPro:MeTrfase_SMT	InterPro:Methyltransf_11	PFAM:PF08241
PFAM:PF08498	EnsemblPlantsGene:PGSC0003DMG400018641	PGSC:PGSC0003DMG400018641	EnsemblPlants:PGSC0003DMT400047969	PFscan:PS51685	PANTHER:PTHR44742
PANTHER:PTHR44742:SF1	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	InterPro:Sterol_MeTrfase_C	TMHMM:TMhelix	UniParc:UPI000295B99F
RefSeq:XP_006364508.1	SEG:seg	:	:	:	:

Description

S-adenosyl-methionine-sterol-C-methyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400018641]

Coordinates

chr1:+:88126157..88127569

Molecular Weight (calculated)

40051.3 Da

IEP (calculated)

6.898

GRAVY (calculated)

-0.125

Length

358 amino acids

Sequence
(BLAST)

001: MDSLTLICTA ALLAAGGLYW FICFFGSAEV KGKRAVQLTG GSIDKENVQD NYKQYWSFFR SPKEIETADK VPVFVDTFYN LVTDIYEWGW GQSFHFSPSL
101: PGKSNREATR IHEEMAVDLL GVKPGSRILD AGCGVGGPMR AIAAHSKANV VGITINEYQV KRARMHNKKA GLDSLCEVVC GNFLQMPFAD NSFDGVYSIE
201: ATCHAPNLEE VYQEIYRVLK PGSLYISYEW VTTELYKAED PEHVEIIHGI ERGDALPGLR TYKDIAQVAK KVGFEVVKEK DLAKPPSHPW WTRLKMGRMA
301: YWRNHILVTI LAFLGIAPKG TVDVHEMLFV TADYLAQGGE KGIFSPMHMI LCRKPAAE

Best Arabidopsis Sequence Match ( AT1G20330.1 )
(BLAST)

001: MDSLTLFFTG ALVAVGIYWF LCVLGPAERK GKRAVDLSGG SISAEKVQDN YKQYWSFFRR PKEIETAEKV PDFVDTFYNL VTDIYEWGWG QSFHFSPSIP
101: GKSHKDATRL HEEMAVDLIQ VKPGQKILDV GCGVGGPMRA IASHSRANVV GITINEYQVN RARLHNKKAG LDALCEVVCG NFLQMPFDDN SFDGAYSIEA
201: TCHAPKLEEV YAEIYRVLKP GSMYVSYEWV TTEKFKAEDD EHVEVIQGIE RGDALPGLRA YVDIAETAKK VGFEIVKEKD LASPPAEPWW TRLKMGRLAY
301: WRNHIVVQIL SAVGVAPKGT VDVHEMLFKT ADYLTRGGET GIFSPMHMIL CRKPESPEES S

Arabidopsis Description

SMT224-methylenesterol C-methyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39227]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.