Factsheet for PGSC0003DMT400006168

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076360.2.1	Tomato	plastid	91.94	77.24
KRH23974	Soybean	cytosol	71.61	75.0
KRH39821	Soybean	cytosol	72.58	74.5
Bra022503.1-P	Field mustard	cytosol	59.35	69.7
CDX91533	Canola	cytosol	59.03	69.32
VIT_16s0039g01410.t01	Wine grape	plastid	74.19	66.67
KRH23976	Soybean	plastid	74.19	65.71
Bra008507.1-P	Field mustard	cytosol	64.84	65.26
OQU83859	Sorghum	cytosol	61.61	63.04
GSMUA_Achr1P27850_001	Banana	plastid	69.35	61.96
Zm00001d017746_P001	Maize	plastid	70.32	61.93
KXG30932	Sorghum	plastid	70.65	61.52
TraesCS6D01G245200.1	Wheat	plastid	70.97	60.27
TraesCS6A01G269700.1	Wheat	plastid	70.97	60.11
HORVU6Hr1G068410.1	Barley	plastid	71.29	59.89
AT1G64970.1	Thale cress	plastid	66.13	58.91
Os02t0701600-01	Rice	plastid	68.39	58.56
CDY37556	Canola	plastid	65.48	58.5
CDY56135	Canola	plastid	65.16	58.21
CDY16380	Canola	plastid	65.81	57.95
TraesCS6B01G297000.1	Wheat	plastid	69.03	56.46
KXG22885	Sorghum	endoplasmic reticulum	59.35	54.28
PGSC0003DMT400093662	Potato	cytosol	22.26	21.17
PGSC0003DMT400047969	Potato	endoplasmic reticulum, plasma membrane	21.94	18.99
PGSC0003DMT400048727	Potato	endoplasmic reticulum, vacuole	20.65	17.93
PGSC0003DMT400017668	Potato	cytosol	19.68	17.63

Protein Annotations

MapMan:10.3.2.6	Gene3D:3.40.50.150	ProteinID:ABE41795	ProteinID:ABE41795.1	ProteinID:ADV36922	ProteinID:ADV36922.1
EMBL:DQ456877	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009058	GO:GO:0009987	GO:GO:0010189	GO:GO:0016740	GO:GO:0032259	GO:GO:0050342
GO:GO:0051741	EMBL:HQ646557	InterPro:IPR025774	UniProt:M0ZQY1	InterPro:MTs_g-TMT	InterPro:Methyltransf_11
PFAM:PF08241	EnsemblPlantsGene:PGSC0003DMG400002398	PGSC:PGSC0003DMG400002398	EnsemblPlants:PGSC0003DMT400006168	PFscan:PS51581	PANTHER:PTHR43591
PANTHER:PTHR43591:SF25	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	UniParc:UPI0002964236	SEG:seg	:

Description

Gamma-tocopherol methyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400002398]

Coordinates

chr8:-:48935231..48939823

Molecular Weight (calculated)

34029.6 Da

IEP (calculated)

5.432

GRAVY (calculated)

-0.205

Length

310 amino acids

Sequence
(BLAST)

001: MASVTDMNVV SSSSVEVGIQ NQQELKKGIA DLYDESSGIW EDIWGDHMHH GYYEPQSSVE LSDHRAAQIR MIEKALSFAA ISEDPAKKPT SIVDVGCGIG
101: GSSRYLAKKY GATAKGITLS PVQAERAQAL ADAQGLGDKV SFQVADALNQ PFPDGQFDLV WSMESGEHMP NKEKFVGELA RVAAPGGTII LVTWCHRDLS
201: PSEESLTPEE KELLNKICKA FYLPAWCSTA DYVRLLQSNS LQDIKAEDWS ENVAPFWPAV IKSALTWKGF TSVLRSGWKT IKAALAMPLM IEGYKKGLIK
301: FAIITCRKPE

Best Arabidopsis Sequence Match ( AT1G64970.1 )
(BLAST)

001: MKATLAAPSS LTSLPYRTNS SFGSKSSLLF RSPSSSSSVS MTTTRGNVAV AAAATSTEAL RKGIAEFYNE TSGLWEEIWG DHMHHGFYDP DSSVQLSDSG
101: HKEAQIRMIE ESLRFAGVTD EEEEKKIKKV VDVGCGIGGS SRYLASKFGA ECIGITLSPV QAKRANDLAA AQSLAHKASF QVADALDQPF EDGKFDLVWS
201: MESGEHMPDK AKFVKELVRV AAPGGRIIIV TWCHRNLSAG EEALQPWEQN ILDKICKTFY LPAWCSTDDY VNLLQSHSLQ DIKCADWSEN VAPFWPAVIR
301: TALTWKGLVS LLRSGMKSIK GALTMPLMIE GYKKGVIKFG IITCQKPL

Arabidopsis Description

VTE4Tocopherol O-methyltransferase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.