Factsheet for TraesCS6A01G269700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G245200.1	Wheat	plastid	98.36	98.63
HORVU6Hr1G068410.1	Barley	plastid	87.7	86.99
TraesCS6B01G297000.1	Wheat	plastid	81.69	78.89
KXG30932	Sorghum	plastid	74.32	76.4
Os02t0701600-01	Rice	plastid	74.59	75.41
OQU83859	Sorghum	cytosol	61.48	74.26
Zm00001d017746_P001	Maize	plastid	71.04	73.86
KRH23974	Soybean	cytosol	59.56	73.65
KRH39821	Soybean	cytosol	60.38	73.18
PGSC0003DMT400006168	Potato	cytosol	60.11	70.97
Bra022503.1-P	Field mustard	cytosol	50.82	70.45
CDX91533	Canola	cytosol	50.27	69.7
GSMUA_Achr1P27850_001	Banana	plastid	65.57	69.16
VIT_16s0039g01410.t01	Wine grape	plastid	62.3	66.09
Bra008507.1-P	Field mustard	cytosol	55.46	65.91
KRH23976	Soybean	plastid	61.75	64.57
KXG22885	Sorghum	endoplasmic reticulum	58.47	63.13
Solyc08g076360.2.1	Tomato	plastid	62.57	62.06
CDY16380	Canola	plastid	59.56	61.93
CDY37556	Canola	plastid	58.2	61.38
CDY56135	Canola	plastid	57.38	60.52
AT1G64970.1	Thale cress	plastid	57.1	60.06
TraesCS5A01G510200.1	Wheat	cytosol	16.94	18.02
TraesCS1A01G204700.1	Wheat	endoplasmic reticulum, extracellular	17.76	17.91
TraesCS5A01G503700.1	Wheat	endoplasmic reticulum, extracellular	17.76	17.81

Protein Annotations

EnsemblPlants:TraesCS6A01G269700.1	EnsemblPlantsGene:TraesCS6A01G269700	Gene3D:3.40.50.150	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	GO:GO:0032259	InterPro:IPR025774	InterPro:MTs_g-TMT
InterPro:Methyltransf_11	InterPro:SAM-dependent_MTases	PANTHER:PTHR43591	PANTHER:PTHR43591:SF25	PFAM:PF08241	PFscan:PS51581
SEG:seg	SUPFAM:SSF53335	TIGR:cd02440	MapMan:10.3.2.6	:	:

Description

No Description!

Coordinates

chr6A:+:496234461..496237687

Molecular Weight (calculated)

39577.1 Da

IEP (calculated)

7.139

GRAVY (calculated)

-0.240

Length

366 amino acids

Sequence
(BLAST)

001: MANSAALLHS LLSTAWTPRR RLDRASATRL APSPGPPCRS RRPARSVRPM ASSTTAARAD AAPPGLKEGI AGLYDESSGL WESIWGEHMH HGFYDSGEAA
101: SMSDHRRAQI RMIEEALAFA AVPDDPTNKP KTIVDVGCGI GGSSRYLANK YGAQCSGITL SPVQAERGNA LAAAQGLSDK ASFQVADALE QPFPDGQFDL
201: VWSMESGEHM PNKQKFVSEL ARVAAPGATI IIVTWCHRNL APSEDSLKPD ELNLLKKICD AYYLPDWCSP SDYVKIAESL SLEDIKTADW SENVAPFWPA
301: VIQSALTWKG LTSLLRSGWK TIKGALVMPL MIQGYKKGLI KFSIITCRKP QAAIEGEPEA ASPSVE

Best Arabidopsis Sequence Match ( AT1G64970.1 )
(BLAST)

001: MKATLAAPSS LTSLPYRTNS SFGSKSSLLF RSPSSSSSVS MTTTRGNVAV AAAATSTEAL RKGIAEFYNE TSGLWEEIWG DHMHHGFYDP DSSVQLSDSG
101: HKEAQIRMIE ESLRFAGVTD EEEEKKIKKV VDVGCGIGGS SRYLASKFGA ECIGITLSPV QAKRANDLAA AQSLAHKASF QVADALDQPF EDGKFDLVWS
201: MESGEHMPDK AKFVKELVRV AAPGGRIIIV TWCHRNLSAG EEALQPWEQN ILDKICKTFY LPAWCSTDDY VNLLQSHSLQ DIKCADWSEN VAPFWPAVIR
301: TALTWKGLVS LLRSGMKSIK GALTMPLMIE GYKKGVIKFG IITCQKPL

Arabidopsis Description

VTE4Tocopherol O-methyltransferase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.