Factsheet for Solyc08g076360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006168	Potato	cytosol	77.24	91.94
KRH23974	Soybean	cytosol	60.43	75.34
KRH39821	Soybean	cytosol	61.52	75.17
Bra022503.1-P	Field mustard	cytosol	49.86	69.7
CDX91533	Canola	cytosol	49.59	69.32
VIT_16s0039g01410.t01	Wine grape	plastid	64.23	68.7
KRH23976	Soybean	plastid	62.87	66.29
Bra008507.1-P	Field mustard	cytosol	54.47	65.26
GSMUA_Achr1P27850_001	Banana	plastid	61.25	65.13
KXG30932	Sorghum	plastid	61.52	63.76
Zm00001d017746_P001	Maize	plastid	60.43	63.35
OQU83859	Sorghum	cytosol	51.76	63.04
TraesCS6D01G245200.1	Wheat	plastid	62.06	62.74
TraesCS6A01G269700.1	Wheat	plastid	62.06	62.57
HORVU6Hr1G068410.1	Barley	plastid	62.33	62.33
Os02t0701600-01	Rice	plastid	60.43	61.6
CDY16380	Canola	plastid	58.27	61.08
CDY37556	Canola	plastid	56.91	60.52
AT1G64970.1	Thale cress	plastid	56.91	60.34
CDY56135	Canola	plastid	56.64	60.23
TraesCS6B01G297000.1	Wheat	plastid	59.62	58.05
KXG22885	Sorghum	endoplasmic reticulum	51.76	56.34
Solyc05g008680.1.1	Tomato	extracellular	18.16	18.46
Solyc10g055680.1.1	Tomato	extracellular	17.34	17.93
Solyc01g111830.2.1	Tomato	nucleus	17.34	17.88
Solyc01g087560.2.1	Tomato	cytosol	16.53	17.63
Solyc10g080150.1.1	Tomato	plastid	16.26	15.19

Protein Annotations

MapMan:10.3.2.6	Gene3D:3.40.50.150	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0009058	GO:GO:0009987	GO:GO:0010189	GO:GO:0016740	GO:GO:0032259
GO:GO:0050342	GO:GO:0051741	InterPro:IPR025774	UniProt:K4CMZ9	InterPro:MTs_g-TMT	InterPro:Methyltransf_11
PFAM:PF08241	PFscan:PS51581	PANTHER:PTHR43591	PANTHER:PTHR43591:SF25	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335
EnsemblPlantsGene:Solyc08g076360.2	EnsemblPlants:Solyc08g076360.2.1	UniParc:UPI000276BCD0	SEG:seg	:	:

Description

Tocopherol O-methyltransferase, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G64970) UniProtKB/Swiss-Prot;Acc:Q9ZSK1]

Coordinates

chr8:-:60331311..60335540

Molecular Weight (calculated)

40697.7 Da

IEP (calculated)

8.137

GRAVY (calculated)

-0.213

Length

369 amino acids

Sequence
(BLAST)

001: MGSQCYSAYS IQSLNPTCPS SSSSSVIFTL LKPQIHRRRI ITCCNSSRRR RRMASVAAMN AVSSSSVEVG IQNQQELKKG IADLYDESSG IWEDIWGDHM
101: HHGYYEPKSS VELSDHRAAQ IRMIEQALSF AAISEDPAKK PTSIVDVGCG IGGSSRYLAK KYGATAKGIT LSPVQAERAQ ALADAQGLGD KVSFQVADAL
201: NQPFPDGQFD LVWSMESGEH MPNKEKFVGE LARVAAPGGT IILVTWCHRD LSPSEESLTP EEKELLNKIC KAFYLPAWCS TADYVKLLQS NSLQDIKAED
301: WSENVAPFWP AVIKSALTWK GFTSVLRSGW KTIKAALAMP LMIEGYKKGL IKFAIITCRK PEYQLLLSY

Best Arabidopsis Sequence Match ( AT1G64970.1 )
(BLAST)

001: MKATLAAPSS LTSLPYRTNS SFGSKSSLLF RSPSSSSSVS MTTTRGNVAV AAAATSTEAL RKGIAEFYNE TSGLWEEIWG DHMHHGFYDP DSSVQLSDSG
101: HKEAQIRMIE ESLRFAGVTD EEEEKKIKKV VDVGCGIGGS SRYLASKFGA ECIGITLSPV QAKRANDLAA AQSLAHKASF QVADALDQPF EDGKFDLVWS
201: MESGEHMPDK AKFVKELVRV AAPGGRIIIV TWCHRNLSAG EEALQPWEQN ILDKICKTFY LPAWCSTDDY VNLLQSHSLQ DIKCADWSEN VAPFWPAVIR
301: TALTWKGLVS LLRSGMKSIK GALTMPLMIE GYKKGVIKFG IITCQKPL

Arabidopsis Description

VTE4Tocopherol O-methyltransferase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.