Factsheet for VIT_16s0039g01410.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23974	Soybean	cytosol	64.35	75.0
KRH39821	Soybean	cytosol	65.51	74.83
PGSC0003DMT400006168	Potato	cytosol	66.67	74.19
Bra022503.1-P	Field mustard	cytosol	54.78	71.59
CDX91533	Canola	cytosol	54.2	70.83
Bra008507.1-P	Field mustard	cytosol	61.16	68.51
GSMUA_Achr1P27850_001	Banana	plastid	67.25	66.86
KRH23976	Soybean	plastid	67.25	66.29
Zm00001d017746_P001	Maize	plastid	65.8	64.49
OQU83859	Sorghum	cytosol	56.52	64.36
Solyc08g076360.2.1	Tomato	plastid	68.7	64.23
KXG30932	Sorghum	plastid	65.8	63.76
CDY56135	Canola	plastid	63.48	63.11
CDY37556	Canola	plastid	63.48	63.11
AT1G64970.1	Thale cress	plastid	63.48	62.93
CDY16380	Canola	plastid	63.77	62.5
HORVU6Hr1G068410.1	Barley	plastid	66.67	62.33
TraesCS6A01G269700.1	Wheat	plastid	66.09	62.3
TraesCS6D01G245200.1	Wheat	plastid	65.8	62.19
Os02t0701600-01	Rice	plastid	65.22	62.15
TraesCS6B01G297000.1	Wheat	plastid	64.93	59.1
KXG22885	Sorghum	endoplasmic reticulum	54.49	55.46
VIT_03s0038g02920.t01	Wine grape	extracellular	18.84	18.26
VIT_08s0007g08470.t01	Wine grape	cytosol	17.97	18.08
VIT_18s0001g00810.t01	Wine grape	plasma membrane	17.68	16.94
VIT_13s0064g00440.t01	Wine grape	plastid	19.13	16.06

Protein Annotations

MapMan:10.3.2.6	EntrezGene:100242641	wikigene:100242641	Gene3D:3.40.50.150	ProteinID:CCB50571	ProteinID:CCB50571.1
UniProt:F6HEC5	EMBL:FN595750	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0009058	GO:GO:0009987	GO:GO:0010189	GO:GO:0016740	GO:GO:0032259
GO:GO:0050342	GO:GO:0051741	InterPro:IPR025774	EntrezGene:LOC100242641	wikigene:LOC100242641	InterPro:MTs_g-TMT
InterPro:Methyltransf_11	PFAM:PF08241	PFscan:PS51581	PANTHER:PTHR43591	PANTHER:PTHR43591:SF25	InterPro:SAM-dependent_MTases
SUPFAM:SSF53335	TIGR:TC55422	TIGR:TC59806	UniParc:UPI00015C8D0C	ArrayExpress:VIT_16s0039g01410	EnsemblPlantsGene:VIT_16s0039g01410
EnsemblPlants:VIT_16s0039g01410.t01	unigene:Vvi.866	RefSeq:XP_002269749	RefSeq:XP_002269749.1	RefSeq:XP_019081827.1	SEG:seg

Description

No Description!

Coordinates

chr16:-:875777..879829

Molecular Weight (calculated)

38167.0 Da

IEP (calculated)

7.761

GRAVY (calculated)

-0.157

Length

345 amino acids

Sequence
(BLAST)

001: MAVIPASCKC HLLPLLQPPQ RLPSPPHVWP RPAVTAPTSR RFARLTAAAI STMSPEDASL KKGIAELYDQ SSGLWEDIWG DHMHHGFYEP DSAASDADHR
101: FAQIRMIEES LRFAGVSEEG EKRPKRVVDV GCGIGGSSRY LAKKYGASCQ GITLSPLQAQ RAQTLAASQG LADKVSFQVA DALDQPFPDG QFDLVWSMES
201: GEHMPDKKKF VSELARVVAP GGTIILVTWC HRDLSPSEES LKPEEKALLD KICSAYYLPD WCSTTDYVKL LESLSLQDIK AADWSEYVAP FWPAVIRSAL
301: TFKGFISLLR SGWKTIRGAL VMPLMIRGYK MGLIKFAIIT CRKPE

Best Arabidopsis Sequence Match ( AT1G64970.1 )
(BLAST)

001: MKATLAAPSS LTSLPYRTNS SFGSKSSLLF RSPSSSSSVS MTTTRGNVAV AAAATSTEAL RKGIAEFYNE TSGLWEEIWG DHMHHGFYDP DSSVQLSDSG
101: HKEAQIRMIE ESLRFAGVTD EEEEKKIKKV VDVGCGIGGS SRYLASKFGA ECIGITLSPV QAKRANDLAA AQSLAHKASF QVADALDQPF EDGKFDLVWS
201: MESGEHMPDK AKFVKELVRV AAPGGRIIIV TWCHRNLSAG EEALQPWEQN ILDKICKTFY LPAWCSTDDY VNLLQSHSLQ DIKCADWSEN VAPFWPAVIR
301: TALTWKGLVS LLRSGMKSIK GALTMPLMIE GYKKGVIKFG IITCQKPL

Arabidopsis Description

VTE4Tocopherol O-methyltransferase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.