CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23974	Soybean	cytosol	76.57	90.54
KRH39821	Soybean	cytosol	75.43	87.42
PGSC0003DMT400006168	Potato	cytosol	65.71	74.19
Bra022503.1-P	Field mustard	cytosol	54.86	72.73
CDX91533	Canola	cytosol	54.29	71.97
Bra008507.1-P	Field mustard	cytosol	60.86	69.16
VIT_16s0039g01410.t01	Wine grape	plastid	66.29	67.25
GSMUA_Achr1P27850_001	Banana	plastid	65.43	65.99
CDY37556	Canola	plastid	63.71	64.27
CDY56135	Canola	plastid	63.14	63.69
AT1G64970.1	Thale cress	plastid	63.14	63.51
OQU83859	Sorghum	cytosol	54.86	63.37
Solyc08g076360.2.1	Tomato	plastid	66.29	62.87
CDY16380	Canola	plastid	62.86	62.5
KXG30932	Sorghum	plastid	62.86	61.8
TraesCS6A01G269700.1	Wheat	plastid	64.57	61.75
Zm00001d017746_P001	Maize	plastid	62.0	61.65
TraesCS6D01G245200.1	Wheat	plastid	64.29	61.64
Os02t0701600-01	Rice	plastid	63.43	61.33
HORVU6Hr1G068410.1	Barley	plastid	64.57	61.25
TraesCS6B01G297000.1	Wheat	plastid	63.14	58.31
KXG22885	Sorghum	endoplasmic reticulum	54.57	56.34
KRH60980	Soybean	endoplasmic reticulum	18.29	17.73
KRH32972	Soybean	cytosol	17.14	17.65
KRH23897	Soybean	endoplasmic reticulum	17.14	17.65
KRH51652	Soybean	endoplasmic reticulum	18.29	17.63
KRH23899	Soybean	cytosol	16.86	17.35
KRH13976	Soybean	endoplasmic reticulum	16.86	17.35

Protein Annotations

MapMan:10.3.2.6	Gene3D:3.40.50.150	EntrezGene:732543	EMBL:ACUP02007164	EMBL:AY960126	EnsemblPlantsGene:GLYMA_12G014300
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058
GO:GO:0009987	GO:GO:0010189	GO:GO:0016740	GO:GO:0032259	GO:GO:0051741	InterPro:IPR025774
EnsemblPlants:KRH23976	ProteinID:KRH23976	ProteinID:KRH23976.1	InterPro:MTs_g-TMT	InterPro:Methyltransf_11	PFAM:PF08241
PFscan:PS51581	PANTHER:PTHR43591	PANTHER:PTHR43591:SF25	UniProt:Q56GA2	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335
UniParc:UPI00004F9746	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:1033151..1037054

Molecular Weight (calculated)

38960.7 Da

IEP (calculated)

8.969

GRAVY (calculated)

-0.235

Length

350 amino acids

Sequence
(BLAST)

001: MATVVRIPTI SCIHIHTFRS QSPRTFARIR VGPRSWAPIR ASAASSERGE IVLEQKPKKD DKKKLQKGIA EFYDESSGLW ENIWGDHMHH GFYDSDSTVS
101: LSDHRAAQIR MIQESLRFAS VSEERSKWPK SIVDVGCGIG GSSRYLAKKF GATSVGITLS PVQAQRANAL AAAQGLADKV SFQVADALQQ PFSDGQFDLV
201: WSMESGEHMP DKAKFVGELA RVAAPGATII IVTWCHRDLG PDEQSLHPWE QDLLKKICDA YYLPAWCSTS DYVKLLQSLS LQDIKSEDWS RFVAPFWPAV
301: IRSAFTWKGL TSLLSSGQKT IKGALAMPLM IEGYKKDLIK FAIITCRKPE

Best Arabidopsis Sequence Match ( AT1G64970.1 )
(BLAST)

001: MKATLAAPSS LTSLPYRTNS SFGSKSSLLF RSPSSSSSVS MTTTRGNVAV AAAATSTEAL RKGIAEFYNE TSGLWEEIWG DHMHHGFYDP DSSVQLSDSG
101: HKEAQIRMIE ESLRFAGVTD EEEEKKIKKV VDVGCGIGGS SRYLASKFGA ECIGITLSPV QAKRANDLAA AQSLAHKASF QVADALDQPF EDGKFDLVWS
201: MESGEHMPDK AKFVKELVRV AAPGGRIIIV TWCHRNLSAG EEALQPWEQN ILDKICKTFY LPAWCSTDDY VNLLQSHSLQ DIKCADWSEN VAPFWPAVIR
301: TALTWKGLVS LLRSGMKSIK GALTMPLMIE GYKKGVIKFG IITCQKPL

Arabidopsis Description

VTE4Tocopherol O-methyltransferase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.