CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23899	Soybean	cytosol	82.06	82.06
KRH32972	Soybean	cytosol	80.0	80.0
KRH13976	Soybean	endoplasmic reticulum	79.41	79.41
AT5G13710.1	Thale cress	cytosol	76.76	77.68
Bra006211.1-P	Field mustard	cytosol	76.18	75.73
PGSC0003DMT400017668	Potato	cytosol	72.94	71.68
GSMUA_Achr4P03610_001	Banana	cytosol	71.47	70.43
GSMUA_Achr3P29670_001	Banana	cytosol	71.47	70.43
KXG34662	Sorghum	cytosol	71.18	70.35
KXG22604	Sorghum	cytosol	70.88	70.06
TraesCS5A01G510200.1	Wheat	cytosol	70.29	69.48
TraesCS4D01G336800.1	Wheat	cytosol	70.29	69.48
TraesCS4B01G340700.1	Wheat	golgi	70.29	69.48
Os07t0206700-01	Rice	cytosol, plasma membrane	70.0	69.19
GSMUA_Achr4P13850_001	Banana	cytosol	66.76	67.16
CDX91102	Canola	mitochondrion, plastid	73.82	65.88
VIT_13s0064g00440.t01	Wine grape	plastid	79.12	65.45
GSMUA_Achr7P27090_001	Banana	endoplasmic reticulum, golgi	71.47	63.12
HORVU4Hr1G084000.2	Barley	plastid	70.88	58.78
Zm00001d019139_P013	Maize	cytosol	64.71	52.76
KRH51652	Soybean	endoplasmic reticulum	38.82	36.36
KRH60980	Soybean	endoplasmic reticulum	38.24	36.01
KRH23974	Soybean	cytosol	17.94	20.61
KRH39821	Soybean	cytosol	17.94	20.2
KRH23976	Soybean	plastid	17.65	17.14

Protein Annotations

EntrezGene:100817534	Gene3D:3.40.50.150	MapMan:5.5.1.1	EMBL:ACUP02007161	EnsemblPlantsGene:GLYMA_12G009200	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0006694	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008757	GO:GO:0009058
GO:GO:0016740	GO:GO:0032259	UniProt:I1LNX7	InterPro:IPR030384	EnsemblPlants:KRH23897	ProteinID:KRH23897
ProteinID:KRH23897.1	InterPro:MeTrfase_SMT	InterPro:Methyltransf_11	PFAM:PF08241	PFAM:PF08498	PFscan:PS51685
PANTHER:PTHR44068	PANTHER:PTHR44068:SF3	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	InterPro:Sterol_MeTrfase_C	UniParc:UPI000233D1A6

Description

hypothetical protein

Coordinates

chr12:+:668626..674404

Molecular Weight (calculated)

38641.1 Da

IEP (calculated)

7.190

GRAVY (calculated)

-0.362

Length

340 amino acids

Sequence
(BLAST)

001: MNLAKGVGGN IDKSQVLSAV EKYEKYHASY GGQEEERKAN YVDMVNKFYD LATSFYEYGW GQSFHFAPRW KGESVREGIK RHEHFIALQL CLKPGQKVLD
101: VGCGIGGPLR EISRFSSTSI TGLNNNEYQI TRAKELNRNT GVDKTCNFVK ADFMKMPFPD NNFDAVYAIE ATCHAPDVYA CYKEIFRVLK PGQLFAAYEW
201: CMTEAFDPNN EEHQKIKEEI EVGDGLPDIR LTTKCVEALK QAGFEVIWEK DLAVNSPVPW YFHLDASHFS LSTFPLTSIG RFFTRSLIRA LEFVRLAPRG
301: SLKVQEILQR AADGLLEGGK KEIFTPMYFF LARKPNFGGQ

Best Arabidopsis Sequence Match ( AT1G76090.1 )
(BLAST)

001: MDSVALYCTA GLIAGAVYWF ICVLGPAERK GKRASDLSGG SISAEKVKDN YNQYWSFFRK PKEIESAEKV PDFVDTFYNL VTDIYEWGWG QSFHFSPHVP
101: GKSDKDATRI HEEMAVDLIK VKPGQKILDA GCGVGGPMRA IAAHSKAQVT GITINEYQVQ RAKLHNKKAG LDSLCNVVCG NFLKMPFDEN TFDGAYSIEA
201: TCHAPKLEEV YSEIFRVMKP GSLFVSYEWV TTEKYRDDDE EHKDVIQGIE RGDALPGLRS YADIAVTAKK VGFEVVKEKD LAKPPSKPWW NRLKMGRIAY
301: WRNHVVVVIL SAIGVAPKGT VDVHKMLFKT ADYLTRGGET GIFSPMHMIL CRKPEKASE

Arabidopsis Description

SMT324-methylenesterol C-methyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q94JS4]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.