Factsheet for Bra006211.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G13710.1	Thale cress	cytosol	93.86	95.54
KRH32972	Soybean	cytosol	85.09	85.59
KRH13976	Soybean	endoplasmic reticulum	85.09	85.59
KRH23899	Soybean	cytosol	81.29	81.76
KXG34662	Sorghum	cytosol	80.12	79.65
KXG22604	Sorghum	cytosol	80.12	79.65
Os07t0206700-01	Rice	cytosol, plasma membrane	79.82	79.36
TraesCS4B01G340700.1	Wheat	golgi	78.95	78.49
TraesCS4D01G336800.1	Wheat	cytosol	78.95	78.49
TraesCS5A01G510200.1	Wheat	cytosol	78.95	78.49
GSMUA_Achr3P29670_001	Banana	cytosol	78.07	77.39
GSMUA_Achr4P03610_001	Banana	cytosol	77.78	77.1
KRH23897	Soybean	endoplasmic reticulum	75.73	76.18
PGSC0003DMT400017668	Potato	cytosol	76.32	75.43
GSMUA_Achr4P13850_001	Banana	cytosol	71.64	72.49
VIT_13s0064g00440.t01	Wine grape	plastid	86.26	71.78
GSMUA_Achr7P27090_001	Banana	endoplasmic reticulum, golgi	77.19	68.57
HORVU4Hr1G084000.2	Barley	plastid	78.66	65.61
Zm00001d019139_P013	Maize	cytosol	72.51	59.47
Bra025811.1-P	Field mustard	extracellular, golgi	40.06	38.48
Bra015789.1-P	Field mustard	endoplasmic reticulum, extracellular	38.3	36.29
Bra022503.1-P	Field mustard	cytosol	16.67	21.59
Bra008507.1-P	Field mustard	cytosol	16.37	18.18

Protein Annotations

Gene3D:3.40.50.150	MapMan:5.5.1.1	EnsemblPlantsGene:Bra006211	EnsemblPlants:Bra006211.1	EnsemblPlants:Bra006211.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0003824	GO:GO:0003838	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005783	GO:GO:0006629	GO:GO:0006694	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0009506	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0016126	GO:GO:0016740	GO:GO:0032259	InterPro:IPR030384
UniProt:M4CPS2	InterPro:MeTrfase_SMT	InterPro:Methyltransf_11	PFAM:PF08241	PFAM:PF08498	PFscan:PS51685
PANTHER:PTHR44068	PANTHER:PTHR44068:SF3	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	InterPro:Sterol_MeTrfase_C	UniParc:UPI000253FAC3

Description

AT5G13710 (E=2e-194) SMT1, CPH | SMT1 (STEROL METHYLTRANSFERASE 1); sterol 24-C-methyltransferase

Coordinates

chrA03:-:2538095..2541196

Molecular Weight (calculated)

38845.2 Da

IEP (calculated)

6.602

GRAVY (calculated)

-0.455

Length

342 amino acids

Sequence
(BLAST)

001: MSKSGAMDLA SNLGGKIDKS DVLTAVEKYE QYHEFHGGDE EERKANYTDM VNKYYDLATS FYEYGWGESF HFAHRWNGES LRESIKRHEH FLALQLGVKP
101: GQKVLDVGCG IGGPLREIAR FSNSSVTGIN NNEYQITRGK ELNRLAGVDK TCNFVKADFM KMPFPENTFD AVYAIEATCH APDAYGCYKE IYRVLKPGQC
201: FAAYEWCMTD AFDPDNAQHQ KIKAEIEIGD GLPDIRLTSK CLEALKQAGF EVIWEKDLAK DSPVPWYLPL DKNHFSLSSF RLTAVGRFIT KNMVKLLEYI
301: RLAPKGSQRV SNFLEKAAEG LVDGGRREIF TPMYFFLARK PE

Best Arabidopsis Sequence Match ( AT5G13710.1 )
(BLAST)

001: MDLASNLGGK IDKSDVLTAV EKYEQYHVFH GGNEEERKAN YTDMVNKYYD LATSFYEYGW GESFHFAQRW KGESLRESIK RHEHFLALQL GIQPGQKVLD
101: VGCGIGGPLR EIARFSNSVV TGLNNNEYQI TRGKELNRLA GVDKTCNFVK ADFMKMPFPE NSFDAVYAIE ATCHAPDAYG CYKEIYRVLK PGQCFAAYEW
201: CMTDAFDPDN AEHQKIKGEI EIGDGLPDIR LTTKCLEALK QAGFEVIWEK DLAKDSPVPW YLPLDKNHFS LSSFRLTAVG RFITKNMVKI LEYIRLAPQG
301: SQRVSNFLEQ AAEGLVDGGR REIFTPMYFF LARKPE

Arabidopsis Description

SMT1Cycloartenol-C-24-methyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9LM02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.