Factsheet for TraesCS4D01G336800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G510200.1	Wheat	cytosol	100.0	100.0
TraesCS4B01G340700.1	Wheat	golgi	100.0	100.0
KXG34662	Sorghum	cytosol	93.31	93.31
KXG22604	Sorghum	cytosol	92.73	92.73
Os07t0206700-01	Rice	cytosol, plasma membrane	91.28	91.28
HORVU4Hr1G084000.2	Barley	plastid	98.26	82.44
Solyc01g087560.2.1	Tomato	cytosol	79.65	79.19
PGSC0003DMT400017668	Potato	cytosol	79.65	79.19
Bra006211.1-P	Field mustard	cytosol	78.49	78.95
GSMUA_Achr3P29670_001	Banana	cytosol	79.07	78.84
GSMUA_Achr4P03610_001	Banana	cytosol	78.2	77.97
KRH32972	Soybean	cytosol	76.74	77.65
KRH13976	Soybean	endoplasmic reticulum	76.74	77.65
VIT_08s0007g08470.t01	Wine grape	cytosol	77.03	77.26
AT5G13710.1	Thale cress	cytosol	75.29	77.08
KRH23899	Soybean	cytosol	75.0	75.88
GSMUA_Achr4P13850_001	Banana	cytosol	70.93	72.19
GSMUA_Achr7P27090_001	Banana	endoplasmic reticulum, golgi	79.36	70.91
KRH23897	Soybean	endoplasmic reticulum	69.48	70.29
Zm00001d019139_P013	Maize	cytosol	84.88	70.02
CDX91102	Canola	mitochondrion, plastid	74.71	67.45
VIT_13s0064g00440.t01	Wine grape	plastid	79.94	66.91
TraesCS5D01G469400.1	Wheat	nucleus, peroxisome, plastid	64.83	60.11
TraesCS4D01G329300.1	Wheat	endoplasmic reticulum, extracellular	36.34	34.34
TraesCS1D01G208000.1	Wheat	endoplasmic reticulum	35.47	33.61
TraesCS6D01G245200.1	Wheat	plastid	18.02	16.99

Protein Annotations

Gene3D:3.40.50.150	MapMan:5.5.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0006694
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0016740	InterPro:IPR030384
InterPro:MeTrfase_SMT	InterPro:Methyltransf_11	PFAM:PF08241	PFAM:PF08498	PFscan:PS51685	PANTHER:PTHR44068
PANTHER:PTHR44068:SF3	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	InterPro:Sterol_MeTrfase_C	EnsemblPlantsGene:TraesCS4D01G336800	EnsemblPlants:TraesCS4D01G336800.1
TIGR:cd02440	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:494286296..494292673

Molecular Weight (calculated)

38769.0 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.411

Length

344 amino acids

Sequence
(BLAST)

001: MSKSGALDLA SGLGGKIDKE QVKSAVDEYE KYHGYYGGKE ESRKSNYTDM VNKYYDLATS FYEYGWGESF HFAHRWNGES LRESIKRHEH FLALQLELKP
101: GMKVLDVGCG IGGPLREIAR FSSTSVTGLN NNDYQITRGK ALNRSVGLGA TCDFVKADFM KMPFSDNTFD AVYAIEATCH APDPVGCYKE IYRVLKPGQC
201: FAVYEWCITD HYDPNNATHK RIKDEIELGN GLPDIRSTRQ CLQAVKDAGF EVIWDKDLAE DSPLPWYLPL DPSRFSLSSF RLTTVGRIIT RNMVKVLEYV
301: GLAPEGSQRV SSFLEKAAEG LVEGGKKEIF TPMYFFVVRK PLSE

Best Arabidopsis Sequence Match ( AT5G13710.1 )
(BLAST)

001: MDLASNLGGK IDKSDVLTAV EKYEQYHVFH GGNEEERKAN YTDMVNKYYD LATSFYEYGW GESFHFAQRW KGESLRESIK RHEHFLALQL GIQPGQKVLD
101: VGCGIGGPLR EIARFSNSVV TGLNNNEYQI TRGKELNRLA GVDKTCNFVK ADFMKMPFPE NSFDAVYAIE ATCHAPDAYG CYKEIYRVLK PGQCFAAYEW
201: CMTDAFDPDN AEHQKIKGEI EIGDGLPDIR LTTKCLEALK QAGFEVIWEK DLAKDSPVPW YLPLDKNHFS LSSFRLTAVG RFITKNMVKI LEYIRLAPQG
301: SQRVSNFLEQ AAEGLVDGGR REIFTPMYFF LARKPE

Arabidopsis Description

SMT1Cycloartenol-C-24-methyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9LM02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.