CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G13710.1	Thale cress	cytosol	80.05	90.77
KRH32972	Soybean	cytosol	74.54	83.53
KRH13976	Soybean	endoplasmic reticulum	74.54	83.53
KRH23899	Soybean	cytosol	70.34	78.82
KXG22604	Sorghum	cytosol	67.98	75.29
KXG34662	Sorghum	cytosol	67.72	75.0
TraesCS4B01G340700.1	Wheat	golgi	67.45	74.71
Os07t0206700-01	Rice	cytosol, plasma membrane	67.45	74.71
TraesCS4D01G336800.1	Wheat	cytosol	67.45	74.71
TraesCS5A01G510200.1	Wheat	cytosol	67.45	74.71
GSMUA_Achr3P29670_001	Banana	cytosol	66.93	73.91
KRH23897	Soybean	endoplasmic reticulum	65.88	73.82
GSMUA_Achr4P03610_001	Banana	cytosol	66.4	73.33
PGSC0003DMT400017668	Potato	cytosol	65.62	72.25
VIT_13s0064g00440.t01	Wine grape	plastid	75.59	70.07
GSMUA_Achr4P13850_001	Banana	cytosol	60.89	68.64
GSMUA_Achr7P27090_001	Banana	endoplasmic reticulum, golgi	66.67	65.97
HORVU4Hr1G084000.2	Barley	plastid	68.5	63.66
Zm00001d019139_P013	Maize	cytosol	61.15	55.88
CDY71885	Canola	extracellular	34.12	36.52
CDY51340	Canola	extracellular	33.6	35.96
CDX73228	Canola	endoplasmic reticulum, extracellular, plasma membrane	32.55	34.44
CDX87642	Canola	endoplasmic reticulum, extracellular, plasma membrane	32.55	34.35
CDX91533	Canola	cytosol	14.44	20.83
CDY37556	Canola	plastid	16.01	17.58
CDY56135	Canola	plastid	15.49	17.0
CDY16380	Canola	plastid	15.49	16.76

Protein Annotations

Gene3D:3.40.50.150	MapMan:5.5.1.1	GO:A0A078DQB6	EnsemblPlants:CDX91102	ProteinID:CDX91102	ProteinID:CDX91102.1
GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0003838	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005783	GO:GO:0006629	GO:GO:0006694
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0009506
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0016126	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00151882001
InterPro:IPR030384	InterPro:MeTrfase_SMT	InterPro:Methyltransf_11	PFAM:PF08241	PFAM:PF08498	PFscan:PS51685
PANTHER:PTHR44068	PANTHER:PTHR44068:SF3	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	InterPro:Sterol_MeTrfase_C	UniParc:UPI0004EE3F08

Description

BnaC02g04950DCycloartenol-C-24-methyltransferase [Source:Projected from Arabidopsis thaliana (AT5G13710) UniProtKB/Swiss-Prot;Acc:Q9LM02]

Coordinates

chrLK031865:+:778073..781242

Molecular Weight (calculated)

43459.3 Da

IEP (calculated)

7.801

GRAVY (calculated)

-0.272

Length

381 amino acids

Sequence
(BLAST)

001: MMVVSLMSHT LQFFYKRKPS TSSQVPLSLT SALRHYSPIH ITFILDRCIM SKTGSLDLAS NLGGNIDKSD VLTAVEKYEQ YHVFHGGDEE ERKANYTDMV
101: NKYYDLATSF YEYGWGESFH FAHRWKGESL RESIKRHEHF LALQLGVKPG QKVLDVGCGI GGPLREIARF RLMFITRGKE LNRLAGVDKT CNFVKADFMK
201: MPFPENTFDA VYAIEATCHA PDAYGCYKEI FRVLKPGQCF AAYEWCMTDA FDPANAQHQK IKAEIEIGDG LPDIRLTSKC LEALKQAGFE VIWEKDLAED
301: SPVPWYLPLD KNHFSLSSFR LTAVGRFITK NMVKVLEYIR LAPKGSQRVS DFLEKAAEGL VDGGRREIFT PMYFFLARKP E

Best Arabidopsis Sequence Match ( AT5G13710.1 )
(BLAST)

001: MDLASNLGGK IDKSDVLTAV EKYEQYHVFH GGNEEERKAN YTDMVNKYYD LATSFYEYGW GESFHFAQRW KGESLRESIK RHEHFLALQL GIQPGQKVLD
101: VGCGIGGPLR EIARFSNSVV TGLNNNEYQI TRGKELNRLA GVDKTCNFVK ADFMKMPFPE NSFDAVYAIE ATCHAPDAYG CYKEIYRVLK PGQCFAAYEW
201: CMTDAFDPDN AEHQKIKGEI EIGDGLPDIR LTTKCLEALK QAGFEVIWEK DLAKDSPVPW YLPLDKNHFS LSSFRLTAVG RFITKNMVKI LEYIRLAPQG
301: SQRVSNFLEQ AAEGLVDGGR REIFTPMYFF LARKPE

Arabidopsis Description

SMT1Cycloartenol-C-24-methyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9LM02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.