Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH32972 | Soybean | cytosol | 98.24 | 98.24 |
| AT5G13710.1 | Thale cress | cytosol | 85.59 | 86.61 |
| KRH23899 | Soybean | cytosol | 85.59 | 85.59 |
| Bra006211.1-P | Field mustard | cytosol | 85.59 | 85.09 |
| KRH23897 | Soybean | endoplasmic reticulum | 79.41 | 79.41 |
| GSMUA_Achr3P29670_001 | Banana | cytosol | 78.82 | 77.68 |
| KXG22604 | Sorghum | cytosol | 78.24 | 77.33 |
| KXG34662 | Sorghum | cytosol | 78.24 | 77.33 |
| TraesCS5A01G510200.1 | Wheat | cytosol | 77.65 | 76.74 |
| TraesCS4D01G336800.1 | Wheat | cytosol | 77.65 | 76.74 |
| TraesCS4B01G340700.1 | Wheat | golgi | 77.65 | 76.74 |
| Os07t0206700-01 | Rice | cytosol, plasma membrane | 77.65 | 76.74 |
| PGSC0003DMT400017668 | Potato | cytosol | 77.94 | 76.59 |
| GSMUA_Achr4P03610_001 | Banana | cytosol | 77.65 | 76.52 |
| CDX91102 | Canola | mitochondrion, plastid | 83.53 | 74.54 |
| VIT_13s0064g00440.t01 | Wine grape | plastid | 88.24 | 72.99 |
| GSMUA_Achr4P13850_001 | Banana | cytosol | 70.29 | 70.71 |
| GSMUA_Achr7P27090_001 | Banana | endoplasmic reticulum, golgi | 77.94 | 68.83 |
| HORVU4Hr1G084000.2 | Barley | plastid | 77.35 | 64.15 |
| Zm00001d019139_P013 | Maize | cytosol | 70.29 | 57.31 |
| KRH51652 | Soybean | endoplasmic reticulum | 40.59 | 38.02 |
| KRH60980 | Soybean | endoplasmic reticulum | 39.41 | 37.12 |
| KRH23974 | Soybean | cytosol | 17.65 | 20.27 |
| KRH39821 | Soybean | cytosol | 17.65 | 19.87 |
| KRH23976 | Soybean | plastid | 17.35 | 16.86 |
Protein Annotations
| EntrezGene:100796978 | Gene3D:3.40.50.150 | MapMan:5.5.1.1 | EMBL:ACUP02009806 | EMBL:BT097360 | UniProt:C6TI82 |
| EnsemblPlantsGene:GLYMA_15G276300 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006629 | GO:GO:0006694 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 |
| GO:GO:0008757 | GO:GO:0009058 | GO:GO:0016740 | GO:GO:0032259 | InterPro:IPR030384 | EnsemblPlants:KRH13976 |
| ProteinID:KRH13976 | ProteinID:KRH13976.1 | ProteinID:KRH13977.1 | InterPro:MeTrfase_SMT | InterPro:Methyltransf_11 | PFAM:PF08241 |
| PFAM:PF08498 | PFscan:PS51685 | PANTHER:PTHR44068 | PANTHER:PTHR44068:SF3 | InterPro:SAM-dependent_MTases | SUPFAM:SSF53335 |
| InterPro:Sterol_MeTrfase_C | UniParc:UPI0001B16A53 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr15:+:51541078..51546842
Molecular Weight (calculated)
38513.0 Da
IEP (calculated)
6.624
GRAVY (calculated)
-0.370
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLASNLGGK IDKAEVLSAV QKYEKYHVCY GGQEEERKAN YTDMVNKYYD LVTSFYEFGW GESFHFAPRW KGESLRESIK RHEHFLASQL GLKPGQKVLD
101: VGCGIGGPLR EISRFSLTSI TGLNNNEYQI TRGKELNRIA GVDKTCNFVK ADFMKMPLPD NSFDAVYAIE ATCHAPDAYG CYKEIFRVLK PGQCFAAYEW
201: CMTDSFDPQN PEHQKIKAEI EIGDGLPDIR LTAKCLEALK QAGFEVIWEK DLAVDSPLPW YLPLDKSHFS LSSFRLTAVG RLFTKNMVKV LEYVGLAPKG
301: SLRVQDFLEK AAEGLVEGGK REIFTPMYFF LARKPDSDRN
101: VGCGIGGPLR EISRFSLTSI TGLNNNEYQI TRGKELNRIA GVDKTCNFVK ADFMKMPLPD NSFDAVYAIE ATCHAPDAYG CYKEIFRVLK PGQCFAAYEW
201: CMTDSFDPQN PEHQKIKAEI EIGDGLPDIR LTAKCLEALK QAGFEVIWEK DLAVDSPLPW YLPLDKSHFS LSSFRLTAVG RLFTKNMVKV LEYVGLAPKG
301: SLRVQDFLEK AAEGLVEGGK REIFTPMYFF LARKPDSDRN
001: MDLASNLGGK IDKSDVLTAV EKYEQYHVFH GGNEEERKAN YTDMVNKYYD LATSFYEYGW GESFHFAQRW KGESLRESIK RHEHFLALQL GIQPGQKVLD
101: VGCGIGGPLR EIARFSNSVV TGLNNNEYQI TRGKELNRLA GVDKTCNFVK ADFMKMPFPE NSFDAVYAIE ATCHAPDAYG CYKEIYRVLK PGQCFAAYEW
201: CMTDAFDPDN AEHQKIKGEI EIGDGLPDIR LTTKCLEALK QAGFEVIWEK DLAKDSPVPW YLPLDKNHFS LSSFRLTAVG RFITKNMVKI LEYIRLAPQG
301: SQRVSNFLEQ AAEGLVDGGR REIFTPMYFF LARKPE
101: VGCGIGGPLR EIARFSNSVV TGLNNNEYQI TRGKELNRLA GVDKTCNFVK ADFMKMPFPE NSFDAVYAIE ATCHAPDAYG CYKEIYRVLK PGQCFAAYEW
201: CMTDAFDPDN AEHQKIKGEI EIGDGLPDIR LTTKCLEALK QAGFEVIWEK DLAKDSPVPW YLPLDKNHFS LSSFRLTAVG RFITKNMVKI LEYIRLAPQG
301: SQRVSNFLEQ AAEGLVDGGR REIFTPMYFF LARKPE
Arabidopsis Description
SMT1Cycloartenol-C-24-methyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9LM02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.