Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH51652 | Soybean | endoplasmic reticulum | 96.68 | 96.14 |
| VIT_18s0001g00810.t01 | Wine grape | plasma membrane | 86.15 | 86.39 |
| AT1G20330.1 | Thale cress | endoplasmic reticulum, golgi | 85.04 | 85.04 |
| CDY71885 | Canola | extracellular | 83.38 | 84.55 |
| Bra025811.1-P | Field mustard | extracellular, golgi | 83.1 | 84.27 |
| CDY51340 | Canola | extracellular | 82.83 | 83.99 |
| CDX73228 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 82.55 | 82.78 |
| Solyc01g111830.2.1 | Tomato | nucleus | 81.72 | 82.4 |
| Bra015789.1-P | Field mustard | endoplasmic reticulum, extracellular | 81.72 | 81.72 |
| CDX87642 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 81.72 | 81.72 |
| PGSC0003DMT400047969 | Potato | endoplasmic reticulum, plasma membrane | 80.61 | 81.28 |
| AT1G76090.1 | Thale cress | endoplasmic reticulum, plasma membrane | 80.06 | 80.5 |
| PGSC0003DMT400048727 | Potato | endoplasmic reticulum, vacuole | 78.95 | 79.83 |
| Solyc10g055680.1.1 | Tomato | extracellular | 77.56 | 78.43 |
| PGSC0003DMT400093662 | Potato | cytosol | 69.53 | 76.99 |
| GSMUA_Achr4P25540_001 | Banana | cytosol | 36.01 | 74.29 |
| Solyc05g008680.1.1 | Tomato | extracellular | 73.13 | 72.73 |
| GSMUA_Achr4P29480_001 | Banana | cytosol | 34.9 | 70.79 |
| TraesCS4B01G332600.1 | Wheat | endoplasmic reticulum, extracellular | 70.91 | 70.33 |
| Os03t0136200-01 | Rice | extracellular | 70.36 | 69.97 |
| TraesCS4D01G329300.1 | Wheat | endoplasmic reticulum, extracellular | 70.36 | 69.78 |
| TraesCS5A01G503700.1 | Wheat | endoplasmic reticulum, extracellular | 70.36 | 69.59 |
| EER95554 | Sorghum | extracellular, golgi | 70.64 | 69.48 |
| Zm00001d048356_P001 | Maize | plasma membrane | 70.64 | 68.92 |
| TraesCS1A01G204700.1 | Wheat | endoplasmic reticulum, extracellular | 69.25 | 68.87 |
| TraesCS1B01G218300.1 | Wheat | endoplasmic reticulum, extracellular | 69.25 | 68.87 |
| TraesCS1D01G208000.1 | Wheat | endoplasmic reticulum | 69.25 | 68.87 |
| HORVU1Hr1G052620.1 | Barley | endoplasmic reticulum | 69.25 | 68.87 |
| HORVU4Hr1G080780.1 | Barley | endoplasmic reticulum, extracellular | 70.08 | 68.19 |
| Zm00001d027548_P001 | Maize | plasma membrane | 69.81 | 67.92 |
| Zm00001d020855_P001 | Maize | cytosol | 25.21 | 67.41 |
| Zm00001d036295_P001 | Maize | cytosol | 24.65 | 65.93 |
| KRH32972 | Soybean | cytosol | 37.4 | 39.71 |
| KRH13976 | Soybean | endoplasmic reticulum | 37.12 | 39.41 |
| KRH23899 | Soybean | cytosol | 36.29 | 38.53 |
| KRH23897 | Soybean | endoplasmic reticulum | 36.01 | 38.24 |
| KRH39821 | Soybean | cytosol | 18.84 | 22.52 |
| KRH23974 | Soybean | cytosol | 17.73 | 21.62 |
| KRH23976 | Soybean | plastid | 17.73 | 18.29 |
Protein Annotations
| EntrezGene:100804517 | Gene3D:3.40.50.150 | MapMan:5.5.1.1 | EMBL:ACUP02002143 | UniProt:D2D5G3 | EMBL:FJ483973 |
| EnsemblPlantsGene:GLYMA_04G020600 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006629 | GO:GO:0006694 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 |
| GO:GO:0008757 | GO:GO:0009058 | GO:GO:0016740 | GO:GO:0032259 | InterPro:IPR030384 | EnsemblPlants:KRH60980 |
| ProteinID:KRH60980 | ProteinID:KRH60980.1 | InterPro:MeTrfase_SMT | InterPro:Methyltransf_11 | PFAM:PF08241 | PFAM:PF08498 |
| PFscan:PS51685 | PANTHER:PTHR44742 | PANTHER:PTHR44742:SF1 | InterPro:SAM-dependent_MTases | SUPFAM:SSF53335 | InterPro:Sterol_MeTrfase_C |
| TMHMM:TMhelix | UniParc:UPI0001BE9349 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:1625507..1627333
Molecular Weight (calculated)
40399.3 Da
IEP (calculated)
6.945
GRAVY (calculated)
-0.295
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPLSLFCTG ALLAGGLYWF VCVLGPAEQK GKRATDLSGG SISAEKVQDN YKQYWSFFRR PKEIETADKV PDFVDTFYNL VTDIYEWGWG QSFHFSPSIP
101: GKSHRDATRL HEEMAVDLIE AKPGNRILDV GCGVGGPMRA IAAHSRANVV GITINEYQVN RARMHNKKAG LESLCEVVCG NFLKMPFPDN SFDGAYSIEA
201: TCHAPKLEEV YAEIFRVLKP GALYVSYEWV TTDKYRGDDP EHVEVIQGIE RGDALPGLRN YTDIAETARK VGFAVVKERD LAKPPAQPWW SRLKMGRIAY
301: WRNHIVVTVL AALGIAPKGT VDVHEMLFKT ADYLTRGGDS GIFSPMHMIL CRKPHDKDDH N
101: GKSHRDATRL HEEMAVDLIE AKPGNRILDV GCGVGGPMRA IAAHSRANVV GITINEYQVN RARMHNKKAG LESLCEVVCG NFLKMPFPDN SFDGAYSIEA
201: TCHAPKLEEV YAEIFRVLKP GALYVSYEWV TTDKYRGDDP EHVEVIQGIE RGDALPGLRN YTDIAETARK VGFAVVKERD LAKPPAQPWW SRLKMGRIAY
301: WRNHIVVTVL AALGIAPKGT VDVHEMLFKT ADYLTRGGDS GIFSPMHMIL CRKPHDKDDH N
001: MDSLTLFFTG ALVAVGIYWF LCVLGPAERK GKRAVDLSGG SISAEKVQDN YKQYWSFFRR PKEIETAEKV PDFVDTFYNL VTDIYEWGWG QSFHFSPSIP
101: GKSHKDATRL HEEMAVDLIQ VKPGQKILDV GCGVGGPMRA IASHSRANVV GITINEYQVN RARLHNKKAG LDALCEVVCG NFLQMPFDDN SFDGAYSIEA
201: TCHAPKLEEV YAEIYRVLKP GSMYVSYEWV TTEKFKAEDD EHVEVIQGIE RGDALPGLRA YVDIAETAKK VGFEIVKEKD LASPPAEPWW TRLKMGRLAY
301: WRNHIVVQIL SAVGVAPKGT VDVHEMLFKT ADYLTRGGET GIFSPMHMIL CRKPESPEES S
101: GKSHKDATRL HEEMAVDLIQ VKPGQKILDV GCGVGGPMRA IASHSRANVV GITINEYQVN RARLHNKKAG LDALCEVVCG NFLQMPFDDN SFDGAYSIEA
201: TCHAPKLEEV YAEIYRVLKP GSMYVSYEWV TTEKFKAEDD EHVEVIQGIE RGDALPGLRA YVDIAETAKK VGFEIVKEKD LASPPAEPWW TRLKMGRLAY
301: WRNHIVVQIL SAVGVAPKGT VDVHEMLFKT ADYLTRGGET GIFSPMHMIL CRKPESPEES S
Arabidopsis Description
SMT224-methylenesterol C-methyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39227]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.