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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 6
  • golgi 5
  • plastid 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:cytosol, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
 endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH60980 Soybean endoplasmic reticulum 96.14 96.68
VIT_18s0001g00810.t01 Wine grape plasma membrane 85.4 86.11
AT1G20330.1 Thale cress endoplasmic reticulum, golgi 85.12 85.6
CDY71885 Canola extracellular 82.92 84.55
Bra025811.1-P Field mustard extracellular, golgi 82.64 84.27
CDY51340 Canola extracellular 82.09 83.71
CDX73228 Canola endoplasmic reticulum, extracellular, plasma membrane 82.09 82.78
Solyc01g111830.2.1 Tomato nucleus 81.54 82.68
CDX87642 Canola endoplasmic reticulum, extracellular, plasma membrane 81.54 81.99
Bra015789.1-P Field mustard endoplasmic reticulum, extracellular 81.27 81.72
PGSC0003DMT400047969 Potato endoplasmic reticulum, plasma membrane 80.44 81.56
AT1G76090.1 Thale cress endoplasmic reticulum, plasma membrane 80.44 81.34
PGSC0003DMT400048727 Potato endoplasmic reticulum, vacuole 78.79 80.11
Solyc10g055680.1.1 Tomato extracellular 77.14 78.43
PGSC0003DMT400093662 Potato cytosol 68.87 76.69
GSMUA_Achr4P25540_001 Banana cytosol 35.81 74.29
Solyc05g008680.1.1 Tomato extracellular 72.45 72.45
GSMUA_Achr4P29480_001 Banana cytosol 34.99 71.35
Os03t0136200-01 Rice extracellular 70.52 70.52
TraesCS4B01G332600.1 Wheat endoplasmic reticulum, extracellular 70.25 70.05
TraesCS4D01G329300.1 Wheat endoplasmic reticulum, extracellular 69.7 69.51
EER95554 Sorghum extracellular, golgi 70.25 69.48
TraesCS5A01G503700.1 Wheat endoplasmic reticulum, extracellular 69.7 69.32
Zm00001d048356_P001 Maize plasma membrane 70.25 68.92
TraesCS1A01G204700.1 Wheat endoplasmic reticulum, extracellular 68.87 68.87
TraesCS1B01G218300.1 Wheat endoplasmic reticulum, extracellular 68.87 68.87
TraesCS1D01G208000.1 Wheat endoplasmic reticulum 68.87 68.87
HORVU1Hr1G052620.1 Barley endoplasmic reticulum 68.87 68.87
Zm00001d027548_P001 Maize plasma membrane 69.7 68.19
HORVU4Hr1G080780.1 Barley endoplasmic reticulum, extracellular 69.42 67.92
Zm00001d020855_P001 Maize cytosol 24.52 65.93
Zm00001d036295_P001 Maize cytosol 23.97 64.44
KRH32972 Soybean cytosol 38.29 40.88
KRH13976 Soybean endoplasmic reticulum 38.02 40.59
KRH23899 Soybean cytosol 36.36 38.82
KRH23897 Soybean endoplasmic reticulum 36.36 38.82
KRH39821 Soybean cytosol 18.46 22.19
KRH23974 Soybean cytosol 17.63 21.62
KRH23976 Soybean plastid 17.63 18.29
Protein Annotations
Gene3D:3.40.50.150MapMan:5.5.1.1EMBL:ACUP02003383EnsemblPlantsGene:GLYMA_06G020700GO:GO:0003674GO:GO:0003824
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006629GO:GO:0006694
GO:GO:0008150GO:GO:0008152GO:GO:0008168GO:GO:0008757GO:GO:0009058GO:GO:0016740
GO:GO:0032259UniProt:I1K7G0InterPro:IPR030384EnsemblPlants:KRH51652ProteinID:KRH51652ProteinID:KRH51652.1
InterPro:MeTrfase_SMTInterPro:Methyltransf_11PFAM:PF08241PFAM:PF08498PFscan:PS51685PANTHER:PTHR44742
PANTHER:PTHR44742:SF1InterPro:SAM-dependent_MTasesSUPFAM:SSF53335InterPro:Sterol_MeTrfase_CTMHMM:TMhelixUniParc:UPI000233A771
Description
hypothetical protein
Coordinates
chr6:+:1571570..1573409
Molecular Weight (calculated)
40385.3 Da
IEP (calculated)
6.734
GRAVY (calculated)
-0.233
Length
363 amino acids
Sequence
(BLAST)
001: MDSLSLFCTG ALLAGGLYWF VCVLGPAEQK GKRATDLSGG SISAEKVQDN YKQYWSFFRR PKEIETADKV PDFVDTFYNL VTDIYEWGWG QSFHFSPSIP
101: GKSHREATRL HEEMAVDLIE AKPGNKILDV GCGVGGPMRA IAAHSRANVV GITINEYQVN RARMHNKKAG LDSLCEVVCG NFLKMPFVDN SFDGAYSIEA
201: TCHAPKLEEV YAEIFRVLKP GALYVSYEWV TTDKYSGDDP EHVEVIQGIE RGDALPGLRS YAEIAETARK VGFAVVKERD LAKPPALPWW SRLKMGRIAY
301: WRNHIVVTVL AALGIAPKGT VDVHEMLFKT ADYLTRGGDS GIFSPMHMIL CRKPHDKDEQ NSG
Best Arabidopsis Sequence Match ( AT1G20330.1 )
(BLAST)
001: MDSLTLFFTG ALVAVGIYWF LCVLGPAERK GKRAVDLSGG SISAEKVQDN YKQYWSFFRR PKEIETAEKV PDFVDTFYNL VTDIYEWGWG QSFHFSPSIP
101: GKSHKDATRL HEEMAVDLIQ VKPGQKILDV GCGVGGPMRA IASHSRANVV GITINEYQVN RARLHNKKAG LDALCEVVCG NFLQMPFDDN SFDGAYSIEA
201: TCHAPKLEEV YAEIYRVLKP GSMYVSYEWV TTEKFKAEDD EHVEVIQGIE RGDALPGLRA YVDIAETAKK VGFEIVKEKD LASPPAEPWW TRLKMGRLAY
301: WRNHIVVQIL SAVGVAPKGT VDVHEMLFKT ADYLTRGGET GIFSPMHMIL CRKPESPEES S
Arabidopsis Description
SMT224-methylenesterol C-methyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39227]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.