CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13976	Soybean	endoplasmic reticulum	98.24	98.24
AT5G13710.1	Thale cress	cytosol	85.59	86.61
KRH23899	Soybean	cytosol	86.18	86.18
Bra006211.1-P	Field mustard	cytosol	85.59	85.09
KRH23897	Soybean	endoplasmic reticulum	80.0	80.0
GSMUA_Achr3P29670_001	Banana	cytosol	79.12	77.97
KXG22604	Sorghum	cytosol	78.24	77.33
KXG34662	Sorghum	cytosol	78.24	77.33
GSMUA_Achr4P03610_001	Banana	cytosol	77.94	76.81
TraesCS5A01G510200.1	Wheat	cytosol	77.65	76.74
TraesCS4D01G336800.1	Wheat	cytosol	77.65	76.74
TraesCS4B01G340700.1	Wheat	golgi	77.65	76.74
PGSC0003DMT400017668	Potato	cytosol	77.94	76.59
Os07t0206700-01	Rice	cytosol, plasma membrane	77.06	76.16
CDX91102	Canola	mitochondrion, plastid	83.53	74.54
VIT_13s0064g00440.t01	Wine grape	plastid	88.24	72.99
GSMUA_Achr4P13850_001	Banana	cytosol	69.71	70.12
GSMUA_Achr7P27090_001	Banana	endoplasmic reticulum, golgi	77.94	68.83
HORVU4Hr1G084000.2	Barley	plastid	77.35	64.15
Zm00001d019139_P013	Maize	cytosol	70.59	57.55
KRH51652	Soybean	endoplasmic reticulum	40.88	38.29
KRH60980	Soybean	endoplasmic reticulum	39.71	37.4
KRH23974	Soybean	cytosol	17.94	20.61
KRH39821	Soybean	cytosol	17.94	20.2
KRH23976	Soybean	plastid	17.65	17.14

Protein Annotations

Gene3D:3.40.50.150	MapMan:5.5.1.1	EMBL:ACUP02006210	EnsemblPlantsGene:GLYMA_10G090500	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006694
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008757	GO:GO:0009058	GO:GO:0016740
GO:GO:0032259	UniProt:I1L9T0	InterPro:IPR030384	EnsemblPlants:KRH32972	ProteinID:KRH32972	ProteinID:KRH32972.1
ProteinID:KRH32973.1	ProteinID:KRH32974.1	InterPro:MeTrfase_SMT	InterPro:Methyltransf_11	PFAM:PF08241	PFAM:PF08498
PFscan:PS51685	PANTHER:PTHR44068	PANTHER:PTHR44068:SF3	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	InterPro:Sterol_MeTrfase_C
UniParc:UPI00023C9443	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:12081064..12086755

Molecular Weight (calculated)

38659.2 Da

IEP (calculated)

6.627

GRAVY (calculated)

-0.381

Length

340 amino acids

Sequence
(BLAST)

001: MDLASNLGGK IDKAEVLSAV QKYEKYHVCY GGQEEERKAN YTDMVNKYYD LVTSFYEFGW GESFHFAPRW KGESLRESIK RHEHFLPLQL GLKPGQKVLD
101: VGCGIGGPLR EISRFSSTSI TGLNNNEYQI TRGKELNRIA GVDKTCNFVK ADFMKMPFPD NSFDAVYAIE ATCHAPDAYG CYKEIFRVLK PGQYFAAYEW
201: CMTDSFDPQN PEHQKIKAEI EIGDGLPDIR LTAKCLEALK QAGFEVIWEK DLAVDSPLPW YLPLDKSHFS LSSFRLTAVG RLFTKNMVKV LEYVGLAPKG
301: SLRVQDFLEK AAEGLVEGGK REIFTPMYFF LARKPDLDRN

Best Arabidopsis Sequence Match ( AT5G13710.1 )
(BLAST)

001: MDLASNLGGK IDKSDVLTAV EKYEQYHVFH GGNEEERKAN YTDMVNKYYD LATSFYEYGW GESFHFAQRW KGESLRESIK RHEHFLALQL GIQPGQKVLD
101: VGCGIGGPLR EIARFSNSVV TGLNNNEYQI TRGKELNRLA GVDKTCNFVK ADFMKMPFPE NSFDAVYAIE ATCHAPDAYG CYKEIYRVLK PGQCFAAYEW
201: CMTDAFDPDN AEHQKIKGEI EIGDGLPDIR LTTKCLEALK QAGFEVIWEK DLAKDSPVPW YLPLDKNHFS LSSFRLTAVG RFITKNMVKI LEYIRLAPQG
301: SQRVSNFLEQ AAEGLVDGGR REIFTPMYFF LARKPE

Arabidopsis Description

SMT1Cycloartenol-C-24-methyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9LM02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.