Factsheet for PGSC0003DMT400017668

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g087560.2.1	Tomato	cytosol	99.13	99.13
TraesCS5A01G510200.1	Wheat	cytosol	79.19	79.65
TraesCS4D01G336800.1	Wheat	cytosol	79.19	79.65
TraesCS4B01G340700.1	Wheat	golgi	79.19	79.65
Os07t0206700-01	Rice	cytosol, plasma membrane	79.19	79.65
KXG34662	Sorghum	cytosol	78.9	79.36
KXG22604	Sorghum	cytosol	78.32	78.78
KRH23899	Soybean	cytosol	76.88	78.24
KRH13976	Soybean	endoplasmic reticulum	76.59	77.94
KRH32972	Soybean	cytosol	76.59	77.94
GSMUA_Achr3P29670_001	Banana	cytosol	76.3	76.52
Bra006211.1-P	Field mustard	cytosol	75.43	76.32
AT5G13710.1	Thale cress	cytosol	73.99	76.19
GSMUA_Achr4P03610_001	Banana	cytosol	75.72	75.94
VIT_08s0007g08470.t01	Wine grape	cytosol	73.41	74.05
KRH23897	Soybean	endoplasmic reticulum	71.68	72.94
GSMUA_Achr4P13850_001	Banana	cytosol	68.79	70.41
GSMUA_Achr7P27090_001	Banana	endoplasmic reticulum, golgi	76.01	68.31
VIT_13s0064g00440.t01	Wine grape	plastid	79.77	67.15
HORVU4Hr1G084000.2	Barley	plastid	79.19	66.83
CDX91102	Canola	mitochondrion, plastid	72.25	65.62
Zm00001d019139_P013	Maize	cytosol	72.25	59.95
PGSC0003DMT400093662	Potato	cytosol	38.73	41.1
PGSC0003DMT400048727	Potato	endoplasmic reticulum, vacuole	39.88	38.66
PGSC0003DMT400047969	Potato	endoplasmic reticulum, plasma membrane	39.31	37.99
PGSC0003DMT400006168	Potato	cytosol	17.63	19.68

Protein Annotations

EntrezGene:102581721	Gene3D:3.40.50.150	MapMan:5.5.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0006694	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0016740
GO:GO:0032259	InterPro:IPR030384	UniProt:M1A996	InterPro:MeTrfase_SMT	InterPro:Methyltransf_11	PFAM:PF08241
PFAM:PF08498	EnsemblPlantsGene:PGSC0003DMG400006855	PGSC:PGSC0003DMG400006855	EnsemblPlants:PGSC0003DMT400017668	PFscan:PS51685	PANTHER:PTHR44068
PANTHER:PTHR44068:SF3	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	InterPro:Sterol_MeTrfase_C	UniParc:UPI0002962E32	RefSeq:XP_006345422.1
SEG:seg	:	:	:	:	:

Description

S-adenosyl-methionine-sterol-C-methyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400006855]

Coordinates

chr1:-:65382844..65389251

Molecular Weight (calculated)

38988.2 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.430

Length

346 amino acids

Sequence
(BLAST)

001: MSKQGAFDLA FGVGGRIGKD DVLSAVDKYE KYHGYYGGEE DERKNNYTDM VNKYYDLCTS FYEYGWGESF HFAPRWKGES LQESIKRHEH FLALQLGLKP
101: GQKVLDVGCG IGGPLREIAR FSSTSVTGLN NNEYQISRGQ VLNRKVGLDQ TCNFVKGDFM KMPFPDNSFD AVYAIEATCH APDPVGCYRE IYRVLKPGQC
201: FAVYEWCMTD AYNPNNEEQK RIKEEIELGN GLPEIRSTQK CLEAARKAGF EVVWDKDLAE DSPVSWYMPL DTSHFSLSSF RLTAVGRLFT RNLVSALEYV
301: GVAPKGSQRV QAFLEKAAEG LVGGAKKGIF TPMYFFLVRK PISDSQ

Best Arabidopsis Sequence Match ( AT5G13710.1 )
(BLAST)

001: MDLASNLGGK IDKSDVLTAV EKYEQYHVFH GGNEEERKAN YTDMVNKYYD LATSFYEYGW GESFHFAQRW KGESLRESIK RHEHFLALQL GIQPGQKVLD
101: VGCGIGGPLR EIARFSNSVV TGLNNNEYQI TRGKELNRLA GVDKTCNFVK ADFMKMPFPE NSFDAVYAIE ATCHAPDAYG CYKEIYRVLK PGQCFAAYEW
201: CMTDAFDPDN AEHQKIKGEI EIGDGLPDIR LTTKCLEALK QAGFEVIWEK DLAKDSPVPW YLPLDKNHFS LSSFRLTAVG RFITKNMVKI LEYIRLAPQG
301: SQRVSNFLEQ AAEGLVDGGR REIFTPMYFF LARKPE

Arabidopsis Description

SMT1Cycloartenol-C-24-methyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9LM02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.