CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34662	Sorghum	cytosol	97.38	97.38
Os07t0206700-01	Rice	cytosol, plasma membrane	93.6	93.6
TraesCS5A01G510200.1	Wheat	cytosol	92.73	92.73
TraesCS4D01G336800.1	Wheat	cytosol	92.73	92.73
TraesCS4B01G340700.1	Wheat	golgi	92.73	92.73
Bra006211.1-P	Field mustard	cytosol	79.65	80.12
GSMUA_Achr3P29670_001	Banana	cytosol	79.94	79.71
AT5G13710.1	Thale cress	cytosol	77.03	78.87
Solyc01g087560.2.1	Tomato	cytosol	79.07	78.61
GSMUA_Achr4P03610_001	Banana	cytosol	78.78	78.55
PGSC0003DMT400017668	Potato	cytosol	78.78	78.32
HORVU4Hr1G084000.2	Barley	plastid	93.31	78.29
KRH32972	Soybean	cytosol	77.33	78.24
KRH13976	Soybean	endoplasmic reticulum	77.33	78.24
VIT_08s0007g08470.t01	Wine grape	cytosol	77.62	77.84
KRH23899	Soybean	cytosol	75.58	76.47
Zm00001d019139_P013	Maize	cytosol	88.66	73.14
GSMUA_Achr4P13850_001	Banana	cytosol	71.8	73.08
GSMUA_Achr7P27090_001	Banana	endoplasmic reticulum, golgi	79.65	71.17
KRH23897	Soybean	endoplasmic reticulum	70.06	70.88
CDX91102	Canola	mitochondrion, plastid	75.29	67.98
VIT_13s0064g00440.t01	Wine grape	plastid	81.1	67.88
KXG37308	Sorghum	cytosol	64.83	63.35
EER93245	Sorghum	cytosol	63.95	62.86
EER90688	Sorghum	cytosol	60.47	61.72
EER95554	Sorghum	extracellular, golgi	36.05	33.79
OQU83859	Sorghum	cytosol	17.44	19.8
KXG22885	Sorghum	endoplasmic reticulum	17.15	17.4
KXG30932	Sorghum	plastid	17.73	17.13

Protein Annotations

Gene3D:3.40.50.150	MapMan:5.5.1.1	EntrezGene:8064726	UniProt:C5YWF1	ProteinID:EES20006.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0006694	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008757	GO:GO:0009058
GO:GO:0016740	GO:GO:0032259	InterPro:IPR030384	EnsemblPlants:KXG22604	ProteinID:KXG22604	ProteinID:KXG22604.1
ProteinID:KXG22605.1	InterPro:MeTrfase_SMT	InterPro:Methyltransf_11	PFAM:PF08241	PFAM:PF08498	PFscan:PS51685
PANTHER:PTHR44068	PANTHER:PTHR44068:SF3	InterPro:SAM-dependent_MTases	EnsemblPlantsGene:SORBI_3009G244900	SUPFAM:SSF53335	unigene:Sbi.9090
InterPro:Sterol_MeTrfase_C	UniParc:UPI0001A89353	RefSeq:XP_002441576.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:58064779..58069498

Molecular Weight (calculated)

38739.9 Da

IEP (calculated)

6.322

GRAVY (calculated)

-0.448

Length

344 amino acids

Sequence
(BLAST)

001: MSKAGALDLA SGLGGKINKE EVKSAVDEYE KYHGYYGGKE EARKSNYTDM VNKYYDLATS FYEYGWGESF HFAHRWNGES LRESIKRHEH FLALQLGLKP
101: GMKVLDVGCG IGGPLREIAR FSSTSVTGLN NNEYQITRGK ELNRLAGVSG TCDFVKADFM KMPFDDNTFD AVYAIEATCH APDPVGCYKE IYRVLKPGQC
201: FAVYEWCITD HYDPNNATHK RIKDEIELGN GLPDIRSTRQ CLQAVKDAGF EVAWDKDLAE DSPLPWYLPL DPSRFSLNSF RLTSVGRMIT RTMVKALEYI
301: GLAPQGSERV SNFLEKAAEG LVEGGKKEIF TPMYFFLARK PLSE

Best Arabidopsis Sequence Match ( AT1G76090.1 )
(BLAST)

001: MDSVALYCTA GLIAGAVYWF ICVLGPAERK GKRASDLSGG SISAEKVKDN YNQYWSFFRK PKEIESAEKV PDFVDTFYNL VTDIYEWGWG QSFHFSPHVP
101: GKSDKDATRI HEEMAVDLIK VKPGQKILDA GCGVGGPMRA IAAHSKAQVT GITINEYQVQ RAKLHNKKAG LDSLCNVVCG NFLKMPFDEN TFDGAYSIEA
201: TCHAPKLEEV YSEIFRVMKP GSLFVSYEWV TTEKYRDDDE EHKDVIQGIE RGDALPGLRS YADIAVTAKK VGFEVVKEKD LAKPPSKPWW NRLKMGRIAY
301: WRNHVVVVIL SAIGVAPKGT VDVHKMLFKT ADYLTRGGET GIFSPMHMIL CRKPEKASE

Arabidopsis Description

SMT324-methylenesterol C-methyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q94JS4]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.