CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22604	Sorghum	cytosol	97.38	97.38
Os07t0206700-01	Rice	cytosol, plasma membrane	93.6	93.6
TraesCS5A01G510200.1	Wheat	cytosol	93.31	93.31
TraesCS4D01G336800.1	Wheat	cytosol	93.31	93.31
TraesCS4B01G340700.1	Wheat	golgi	93.31	93.31
Bra006211.1-P	Field mustard	cytosol	79.65	80.12
GSMUA_Achr3P29670_001	Banana	cytosol	79.94	79.71
Solyc01g087560.2.1	Tomato	cytosol	79.36	78.9
PGSC0003DMT400017668	Potato	cytosol	79.36	78.9
HORVU4Hr1G084000.2	Barley	plastid	93.9	78.78
AT5G13710.1	Thale cress	cytosol	76.74	78.57
GSMUA_Achr4P03610_001	Banana	cytosol	78.78	78.55
KRH32972	Soybean	cytosol	77.33	78.24
KRH13976	Soybean	endoplasmic reticulum	77.33	78.24
VIT_08s0007g08470.t01	Wine grape	cytosol	77.62	77.84
KRH23899	Soybean	cytosol	75.29	76.18
Zm00001d019139_P013	Maize	cytosol	89.53	73.86
GSMUA_Achr4P13850_001	Banana	cytosol	72.38	73.67
KRH23897	Soybean	endoplasmic reticulum	70.35	71.18
GSMUA_Achr7P27090_001	Banana	endoplasmic reticulum, golgi	79.65	71.17
CDX91102	Canola	mitochondrion, plastid	75.0	67.72
VIT_13s0064g00440.t01	Wine grape	plastid	80.52	67.4
KXG37308	Sorghum	cytosol	65.12	63.64
EER93245	Sorghum	cytosol	64.24	63.14
EER90688	Sorghum	cytosol	60.76	62.02
EER95554	Sorghum	extracellular, golgi	36.05	33.79
OQU83859	Sorghum	cytosol	17.15	19.47
KXG30932	Sorghum	plastid	17.73	17.13
KXG22885	Sorghum	endoplasmic reticulum	16.57	16.81

Protein Annotations

Gene3D:3.40.50.150	MapMan:5.5.1.1	UniProt:A0A1B6Q9V2	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0006694	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0016740
GO:GO:0032259	InterPro:IPR030384	ProteinID:KXG34661.1	EnsemblPlants:KXG34662	ProteinID:KXG34662	ProteinID:KXG34662.1
InterPro:MeTrfase_SMT	InterPro:Methyltransf_11	ProteinID:OQU88676.1	ProteinID:OQU88677.1	PFAM:PF08241	PFAM:PF08498
PFscan:PS51685	PANTHER:PTHR44068	PANTHER:PTHR44068:SF3	InterPro:SAM-dependent_MTases	EnsemblPlantsGene:SORBI_3002G073700	SUPFAM:SSF53335
InterPro:Sterol_MeTrfase_C	UniParc:UPI0003C7153C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:7653306..7659603

Molecular Weight (calculated)

38643.8 Da

IEP (calculated)

6.119

GRAVY (calculated)

-0.427

Length

344 amino acids

Sequence
(BLAST)

001: MSKSGALDLA SGLGGKIDKE GVKSAVDEYE KYHGYYGGKE EARKSNYTDM VNKYYDLATS FYEYGWGESF HFAHRWNGES LRESIKRHEH FLALQLGLKP
101: GMKVLDVGCG IGGPLREIAR FSSTSVTGLN NNEYQITRGK ELNRLAGISG TCDFVKADFM KMPFDDNTFD AVYAIEATCH APDPVGCYKE IYRVLKPGQC
201: FAVYEWCITD HYDPNNATHK RIKDEIELGN GLPDIRSTRQ CLQAVKDAGF EVVWDKDLAE DSPLPWYLPL DPSRFSLSSF RLTSVGRMIT RTMVKALEYV
301: GLAPQGSERV SNFLEKAAEG LVEGGKKEIF TPMYFFLAQK PVSE

Best Arabidopsis Sequence Match ( AT5G13710.1 )
(BLAST)

001: MDLASNLGGK IDKSDVLTAV EKYEQYHVFH GGNEEERKAN YTDMVNKYYD LATSFYEYGW GESFHFAQRW KGESLRESIK RHEHFLALQL GIQPGQKVLD
101: VGCGIGGPLR EIARFSNSVV TGLNNNEYQI TRGKELNRLA GVDKTCNFVK ADFMKMPFPE NSFDAVYAIE ATCHAPDAYG CYKEIYRVLK PGQCFAAYEW
201: CMTDAFDPDN AEHQKIKGEI EIGDGLPDIR LTTKCLEALK QAGFEVIWEK DLAKDSPVPW YLPLDKNHFS LSSFRLTAVG RFITKNMVKI LEYIRLAPQG
301: SQRVSNFLEQ AAEGLVDGGR REIFTPMYFF LARKPE

Arabidopsis Description

SMT1Cycloartenol-C-24-methyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9LM02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.