CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32972	Soybean	cytosol	86.18	86.18
KRH13976	Soybean	endoplasmic reticulum	85.59	85.59
AT5G13710.1	Thale cress	cytosol	81.76	82.74
KRH23897	Soybean	endoplasmic reticulum	82.06	82.06
Bra006211.1-P	Field mustard	cytosol	81.76	81.29
PGSC0003DMT400017668	Potato	cytosol	78.24	76.88
GSMUA_Achr3P29670_001	Banana	cytosol	77.35	76.23
GSMUA_Achr4P03610_001	Banana	cytosol	77.06	75.94
KXG22604	Sorghum	cytosol	76.47	75.58
KXG34662	Sorghum	cytosol	76.18	75.29
TraesCS5A01G510200.1	Wheat	cytosol	75.88	75.0
TraesCS4D01G336800.1	Wheat	cytosol	75.88	75.0
TraesCS4B01G340700.1	Wheat	golgi	75.88	75.0
Os07t0206700-01	Rice	cytosol, plasma membrane	75.59	74.71
GSMUA_Achr4P13850_001	Banana	cytosol	70.0	70.41
CDX91102	Canola	mitochondrion, plastid	78.82	70.34
VIT_13s0064g00440.t01	Wine grape	plastid	84.41	69.83
GSMUA_Achr7P27090_001	Banana	endoplasmic reticulum, golgi	76.47	67.53
HORVU4Hr1G084000.2	Barley	plastid	75.29	62.44
Zm00001d019139_P013	Maize	cytosol	68.53	55.88
KRH51652	Soybean	endoplasmic reticulum	38.82	36.36
KRH60980	Soybean	endoplasmic reticulum	38.53	36.29
KRH39821	Soybean	cytosol	17.35	19.54
KRH23974	Soybean	cytosol	16.76	19.26
KRH23976	Soybean	plastid	17.35	16.86

Protein Annotations

EntrezGene:100818061	Gene3D:3.40.50.150	MapMan:5.5.1.1	EMBL:ACUP02007161	EnsemblPlantsGene:GLYMA_12G009300	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0006694	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008757	GO:GO:0009058
GO:GO:0016740	GO:GO:0032259	UniProt:I1LNX8	InterPro:IPR030384	EnsemblPlants:KRH23899	ProteinID:KRH23899
ProteinID:KRH23899.1	InterPro:MeTrfase_SMT	InterPro:Methyltransf_11	PFAM:PF08241	PFAM:PF08498	PFscan:PS51685
PANTHER:PTHR44068	PANTHER:PTHR44068:SF3	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	InterPro:Sterol_MeTrfase_C	UniParc:UPI000233D1A7

Description

hypothetical protein

Coordinates

chr12:+:675878..679976

Molecular Weight (calculated)

38572.7 Da

IEP (calculated)

6.321

GRAVY (calculated)

-0.390

Length

340 amino acids

Sequence
(BLAST)

001: MNLASGVGGK IEKSQILSAV EKYEKYHVCH GGQEEERKAN YTDMVNKYYD LSTSFYEFGW GQSFHFAHRW KGESLQESIK RHEHFLALQL GLKPGQKVLD
101: VGCGIGGPLR EISRFSSTSV TGLNNNEYQI TRGEALNRIA GVDKTCNFVK ADFMKMPFQD NSFDAVYAIE ATCHAPDAYG CYKEIFRVLK PGQYFAAYEW
201: CMTDAFDPNN EEHQRIKAEI EIGDGLPDIR LTTKCAEALK QAGFELIWEK DLAIESPVPW YFPLDTSRFS LTSFRLTAVG RFFTRSLVKG LEYVGFAPKG
301: SLRVQEFLEK AADGLVEGGK KEIFTPMYFF LARKPESSDY

Best Arabidopsis Sequence Match ( AT1G20330.1 )
(BLAST)

001: MDSLTLFFTG ALVAVGIYWF LCVLGPAERK GKRAVDLSGG SISAEKVQDN YKQYWSFFRR PKEIETAEKV PDFVDTFYNL VTDIYEWGWG QSFHFSPSIP
101: GKSHKDATRL HEEMAVDLIQ VKPGQKILDV GCGVGGPMRA IASHSRANVV GITINEYQVN RARLHNKKAG LDALCEVVCG NFLQMPFDDN SFDGAYSIEA
201: TCHAPKLEEV YAEIYRVLKP GSMYVSYEWV TTEKFKAEDD EHVEVIQGIE RGDALPGLRA YVDIAETAKK VGFEIVKEKD LASPPAEPWW TRLKMGRLAY
301: WRNHIVVQIL SAVGVAPKGT VDVHEMLFKT ADYLTRGGET GIFSPMHMIL CRKPESPEES S

Arabidopsis Description

SMT224-methylenesterol C-methyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39227]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.