Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006211.1-P | Field mustard | cytosol | 95.54 | 93.86 |
| KRH32972 | Soybean | cytosol | 86.61 | 85.59 |
| KRH13976 | Soybean | endoplasmic reticulum | 86.61 | 85.59 |
| KRH23899 | Soybean | cytosol | 82.74 | 81.76 |
| CDX91102 | Canola | mitochondrion, plastid | 90.77 | 80.05 |
| KXG22604 | Sorghum | cytosol | 78.87 | 77.03 |
| KRH23897 | Soybean | endoplasmic reticulum | 77.68 | 76.76 |
| KXG34662 | Sorghum | cytosol | 78.57 | 76.74 |
| Os07t0206700-01 | Rice | cytosol, plasma membrane | 78.27 | 76.45 |
| GSMUA_Achr4P03610_001 | Banana | cytosol | 77.38 | 75.36 |
| TraesCS4D01G336800.1 | Wheat | cytosol | 77.08 | 75.29 |
| TraesCS4B01G340700.1 | Wheat | golgi | 77.08 | 75.29 |
| TraesCS5A01G510200.1 | Wheat | cytosol | 77.08 | 75.29 |
| GSMUA_Achr3P29670_001 | Banana | cytosol | 76.79 | 74.78 |
| PGSC0003DMT400017668 | Potato | cytosol | 76.19 | 73.99 |
| GSMUA_Achr4P13850_001 | Banana | cytosol | 70.54 | 70.12 |
| VIT_13s0064g00440.t01 | Wine grape | plastid | 85.42 | 69.83 |
| GSMUA_Achr7P27090_001 | Banana | endoplasmic reticulum, golgi | 76.19 | 66.49 |
| HORVU4Hr1G084000.2 | Barley | plastid | 77.08 | 63.17 |
| Zm00001d019139_P013 | Maize | cytosol | 71.13 | 57.31 |
| AT1G76090.1 | Thale cress | endoplasmic reticulum, plasma membrane | 38.99 | 36.49 |
| AT1G20330.1 | Thale cress | endoplasmic reticulum, golgi | 38.1 | 35.46 |
| AT1G64970.1 | Thale cress | plastid | 16.37 | 15.8 |
Protein Annotations
| Gene3D:3.40.50.150 | MapMan:5.5.1.1 | EntrezGene:831216 | ProteinID:AED91930.1 | ProteinID:AED91931.1 | EMBL:AF090372 |
| EMBL:AF195648 | EMBL:AF494289 | ArrayExpress:AT5G13710 | EnsemblPlantsGene:AT5G13710 | RefSeq:AT5G13710 | TAIR:AT5G13710 |
| RefSeq:AT5G13710-TAIR-G | EnsemblPlants:AT5G13710.1 | TAIR:AT5G13710.1 | EMBL:AY120716 | ProteinID:BAB08698.1 | EMBL:BT000058 |
| CHEMBL:CHEMBL4264 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003838 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005783 | GO:GO:0006629 |
| GO:GO:0006694 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0008202 |
| GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0016126 |
| GO:GO:0016740 | GO:GO:0032259 | InterPro:IPR030384 | InterPro:MeTrfase_SMT | InterPro:Methyltransf_11 | RefSeq:NP_001078579.1 |
| RefSeq:NP_196875.1 | PFAM:PF08241 | PFAM:PF08498 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51685 | PANTHER:PTHR44068 | PANTHER:PTHR44068:SF3 |
| UniProt:Q9LM02 | InterPro:SAM-dependent_MTases | Symbol:SMT1 | SUPFAM:SSF53335 | InterPro:Sterol_MeTrfase_C | UniParc:UPI00000AC118 |
Description
SMT1Cycloartenol-C-24-methyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9LM02]
Coordinates
chr5:-:4423555..4427324
Molecular Weight (calculated)
38270.5 Da
IEP (calculated)
6.119
GRAVY (calculated)
-0.423
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLASNLGGK IDKSDVLTAV EKYEQYHVFH GGNEEERKAN YTDMVNKYYD LATSFYEYGW GESFHFAQRW KGESLRESIK RHEHFLALQL GIQPGQKVLD
101: VGCGIGGPLR EIARFSNSVV TGLNNNEYQI TRGKELNRLA GVDKTCNFVK ADFMKMPFPE NSFDAVYAIE ATCHAPDAYG CYKEIYRVLK PGQCFAAYEW
201: CMTDAFDPDN AEHQKIKGEI EIGDGLPDIR LTTKCLEALK QAGFEVIWEK DLAKDSPVPW YLPLDKNHFS LSSFRLTAVG RFITKNMVKI LEYIRLAPQG
301: SQRVSNFLEQ AAEGLVDGGR REIFTPMYFF LARKPE
101: VGCGIGGPLR EIARFSNSVV TGLNNNEYQI TRGKELNRLA GVDKTCNFVK ADFMKMPFPE NSFDAVYAIE ATCHAPDAYG CYKEIYRVLK PGQCFAAYEW
201: CMTDAFDPDN AEHQKIKGEI EIGDGLPDIR LTTKCLEALK QAGFEVIWEK DLAKDSPVPW YLPLDKNHFS LSSFRLTAVG RFITKNMVKI LEYIRLAPQG
301: SQRVSNFLEQ AAEGLVDGGR REIFTPMYFF LARKPE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.