Factsheet for Zm00001d027548_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048356_P001	Maize	plasma membrane	95.96	96.22
EER95554	Sorghum	extracellular, golgi	94.07	95.1
Os03t0136200-01	Rice	extracellular	90.03	92.01
TraesCS4D01G329300.1	Wheat	endoplasmic reticulum, extracellular	88.14	89.84
TraesCS5A01G503700.1	Wheat	endoplasmic reticulum, extracellular	87.87	89.32
TraesCS4B01G332600.1	Wheat	endoplasmic reticulum, extracellular	87.6	89.29
Zm00001d036295_P001	Maize	cytosol	32.34	88.89
HORVU4Hr1G080780.1	Barley	endoplasmic reticulum, extracellular	87.6	87.6
TraesCS1A01G204700.1	Wheat	endoplasmic reticulum, extracellular	84.91	86.78
TraesCS1B01G218300.1	Wheat	endoplasmic reticulum, extracellular	84.64	86.5
HORVU1Hr1G052620.1	Barley	endoplasmic reticulum	84.1	85.95
TraesCS1D01G208000.1	Wheat	endoplasmic reticulum	84.1	85.95
Zm00001d020855_P001	Maize	cytosol	30.46	83.7
GSMUA_Achr4P25540_001	Banana	cytosol	34.77	73.71
VIT_03s0038g02920.t01	Wine grape	extracellular	70.08	73.03
GSMUA_Achr4P29480_001	Banana	cytosol	35.04	73.03
Solyc01g111830.2.1	Tomato	nucleus	69.27	71.79
PGSC0003DMT400047969	Potato	endoplasmic reticulum, plasma membrane	68.19	70.67
VIT_18s0001g00810.t01	Wine grape	plasma membrane	68.46	70.56
PGSC0003DMT400093662	Potato	cytosol	61.73	70.25
CDY71885	Canola	extracellular	67.39	70.22
AT1G20330.1	Thale cress	endoplasmic reticulum, golgi	67.92	69.81
KRH60980	Soybean	endoplasmic reticulum	67.92	69.81
KRH51652	Soybean	endoplasmic reticulum	68.19	69.7
CDY51340	Canola	extracellular	66.85	69.66
Bra025811.1-P	Field mustard	extracellular, golgi	66.85	69.66
PGSC0003DMT400048727	Potato	endoplasmic reticulum, vacuole	66.31	68.91
Solyc10g055680.1.1	Tomato	extracellular	65.5	68.07
Bra015789.1-P	Field mustard	endoplasmic reticulum, extracellular	65.77	67.59
CDX73228	Canola	endoplasmic reticulum, extracellular, plasma membrane	65.5	67.5
CDX87642	Canola	endoplasmic reticulum, extracellular, plasma membrane	64.96	66.76
Solyc05g008680.1.1	Tomato	extracellular	64.42	65.84
AT1G76090.1	Thale cress	endoplasmic reticulum, plasma membrane	63.07	65.18
Zm00001d013035_P004	Maize	cytosol	32.88	34.37
Zm00001d044846_P001	Maize	cytosol	11.86	30.99
Zm00001d019139_P013	Maize	cytosol	30.46	27.1
Zm00001d013037_P003	Maize	cytosol	22.64	26.84
Zm00001d017746_P001	Maize	plastid	16.71	17.61

Protein Annotations

EntrezGene:100192647	Gene3D:3.40.50.150	MapMan:5.5.1.1	UniProt:B4FB47	EMBL:BT034335	EMBL:BT034685
EMBL:BT040017	EMBL:BT066549	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629
GO:GO:0006694	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0032259	InterPro:IPR030384	InterPro:MeTrfase_SMT	InterPro:Methyltransf_11
ProteinID:ONL93411.1	PFAM:PF08241	PFAM:PF08498	PFscan:PS51685	PANTHER:PTHR44742	PANTHER:PTHR44742:SF2
InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	InterPro:Sterol_MeTrfase_C	TMHMM:TMhelix	UniParc:UPI00017B6922	EnsemblPlantsGene:Zm00001d027548
EnsemblPlants:Zm00001d027548_P001	EnsemblPlants:Zm00001d027548_T001	SEG:seg	:	:	:

Description

sterol methyl transferase2

Coordinates

chr1:+:8046302..8047417

Molecular Weight (calculated)

41283.5 Da

IEP (calculated)

7.963

GRAVY (calculated)

-0.213

Length

371 amino acids

Sequence
(BLAST)

001: MEAATMAWTA AVVGAGLVYW FVWVMGAAEV KGKRAVDLKM GSITRDKVQD KYTQYWSFFR RPKETATTAA SAEKVPAFVD TFYNLVTDIY EWGWGQSFHF
101: SPSLPGRSHR DATRVHEERV ADLLGARPGH RLLDVGCGVG GPMRAIAAHS GSDVVGITIN EYQVKRARAH NRKAGLDSPR CEVVCGNFLS MPFPDASFDG
201: AYSIEATCHA PRLQDVYGEV YRVLKPGRLY VSYEWVTTPL YHAEDPGHVE CVHGIERGDA LPGLRRQDEI AAIAKEAGFE VLKEQDLALP PALPWWTRLK
301: MGRIAYWRNS IVVRVLTLLR IAPKGVSEVH EMLYETAQHL TRGGETGIFT PMHMVLLRKP PAAASTEEEA K

Best Arabidopsis Sequence Match ( AT1G20330.1 )
(BLAST)

001: MDSLTLFFTG ALVAVGIYWF LCVLGPAERK GKRAVDLSGG SISAEKVQDN YKQYWSFFRR PKEIETAEKV PDFVDTFYNL VTDIYEWGWG QSFHFSPSIP
101: GKSHKDATRL HEEMAVDLIQ VKPGQKILDV GCGVGGPMRA IASHSRANVV GITINEYQVN RARLHNKKAG LDALCEVVCG NFLQMPFDDN SFDGAYSIEA
201: TCHAPKLEEV YAEIYRVLKP GSMYVSYEWV TTEKFKAEDD EHVEVIQGIE RGDALPGLRA YVDIAETAKK VGFEIVKEKD LASPPAEPWW TRLKMGRLAY
301: WRNHIVVQIL SAVGVAPKGT VDVHEMLFKT ADYLTRGGET GIFSPMHMIL CRKPESPEES S

Arabidopsis Description

SMT224-methylenesterol C-methyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39227]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.