Factsheet for Zm00001d017746_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30932	Sorghum	plastid	86.93	85.96
KRH23974	Soybean	cytosol	59.94	71.28
Os02t0701600-01	Rice	plastid	73.3	71.27
TraesCS6A01G269700.1	Wheat	plastid	73.86	71.04
TraesCS6D01G245200.1	Wheat	plastid	73.58	70.96
KRH39821	Soybean	cytosol	60.51	70.53
PGSC0003DMT400006168	Potato	cytosol	61.93	70.32
HORVU6Hr1G068410.1	Barley	plastid	73.58	70.19
Bra022503.1-P	Field mustard	cytosol	51.99	69.32
CDX91533	Canola	cytosol	51.42	68.56
TraesCS6B01G297000.1	Wheat	plastid	71.59	66.49
VIT_16s0039g01410.t01	Wine grape	plastid	64.49	65.8
Bra008507.1-P	Field mustard	cytosol	57.1	65.26
GSMUA_Achr1P27850_001	Banana	plastid	63.07	63.98
KRH23976	Soybean	plastid	61.65	62.0
Solyc08g076360.2.1	Tomato	plastid	63.35	60.43
CDY37556	Canola	plastid	59.38	60.23
CDY16380	Canola	plastid	59.94	59.94
CDY56135	Canola	plastid	58.81	59.65
AT1G64970.1	Thale cress	plastid	57.95	58.62
Zm00001d048356_P001	Maize	plasma membrane	18.18	17.3
Zm00001d013035_P004	Maize	cytosol	17.05	16.9
Zm00001d027548_P001	Maize	plasma membrane	17.61	16.71
Zm00001d020855_P001	Maize	cytosol	5.68	14.81
Zm00001d019139_P013	Maize	cytosol	17.33	14.63
Zm00001d036295_P001	Maize	cytosol	5.4	14.07
Zm00001d013037_P003	Maize	cytosol	11.93	13.42
Zm00001d044846_P001	Maize	cytosol	4.55	11.27

Protein Annotations

MapMan:10.3.2.6	Gene3D:3.40.50.150	EntrezGene:732837	ProteinID:AQK73913.1	EMBL:BT043281	EMBL:DQ456879
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058
GO:GO:0009987	GO:GO:0010189	GO:GO:0016740	GO:GO:0032259	GO:GO:0050342	GO:GO:0051741
InterPro:IPR025774	InterPro:MTs_g-TMT	InterPro:Methyltransf_11	PFAM:PF08241	PFscan:PS51581	PANTHER:PTHR43591
PANTHER:PTHR43591:SF25	UniProt:Q1PBH6	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	UniParc:UPI0000D5BA92	EnsemblPlantsGene:Zm00001d017746
EnsemblPlants:Zm00001d017746_P001	EnsemblPlants:Zm00001d017746_T001	SEG:seg	:	:	:

Description

vitamin E synthesis4 vitamin E synthesis4

Coordinates

chr5:+:205825586..205829216

Molecular Weight (calculated)

38363.9 Da

IEP (calculated)

8.394

GRAVY (calculated)

-0.214

Length

352 amino acids

Sequence
(BLAST)

001: MAHAALLHCS QSSRSLAACR RGSHYRAPSH VPRHSRRLRR AVVSLRPMAS STAQAPATAP PGLKEGIAGL YDESSGLWEN IWGDHMHHGF YDSSEAASMA
101: DHRRAQIRMI EEALAFAGVP ASDDPEKTPK TIVDVGCGIG GSSRYLAKKY GAQCTGITLS PVQAERGNAL AAAQGLSDQV TLQVADALEQ PFPDGQFDLV
201: WSMESGEHMP DKRKFVSELA RVAAPGGTII IVTWCHRNLD PSETSLKPDE LSLLRRICDA YYLPDWCSPS DYVNIAKSLS LEDIKTADWS ENVAPFWPAV
301: IKSALTWKGF TSLLTTGWKT IRGAMVMPLM IQGYKKGLIK FTIITCRKPG AA

Best Arabidopsis Sequence Match ( AT1G64970.1 )
(BLAST)

001: MKATLAAPSS LTSLPYRTNS SFGSKSSLLF RSPSSSSSVS MTTTRGNVAV AAAATSTEAL RKGIAEFYNE TSGLWEEIWG DHMHHGFYDP DSSVQLSDSG
101: HKEAQIRMIE ESLRFAGVTD EEEEKKIKKV VDVGCGIGGS SRYLASKFGA ECIGITLSPV QAKRANDLAA AQSLAHKASF QVADALDQPF EDGKFDLVWS
201: MESGEHMPDK AKFVKELVRV AAPGGRIIIV TWCHRNLSAG EEALQPWEQN ILDKICKTFY LPAWCSTDDY VNLLQSHSLQ DIKCADWSEN VAPFWPAVIR
301: TALTWKGLVS LLRSGMKSIK GALTMPLMIE GYKKGVIKFG IITCQKPL

Arabidopsis Description

VTE4Tocopherol O-methyltransferase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.