CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91533	Canola	cytosol	70.17	93.56
CDY37556	Canola	plastid	91.48	92.8
CDY56135	Canola	plastid	90.06	91.35
AT1G64970.1	Thale cress	plastid	79.26	80.17
KRH39821	Soybean	cytosol	62.78	73.18
KRH23974	Soybean	cytosol	61.36	72.97
PGSC0003DMT400006168	Potato	cytosol	57.95	65.81
VIT_16s0039g01410.t01	Wine grape	plastid	62.5	63.77
KRH23976	Soybean	plastid	62.5	62.86
GSMUA_Achr1P27850_001	Banana	plastid	59.94	60.81
Os02t0701600-01	Rice	plastid	62.22	60.5
OQU83859	Sorghum	cytosol	51.7	60.07
Zm00001d017746_P001	Maize	plastid	59.94	59.94
KXG30932	Sorghum	plastid	60.51	59.83
TraesCS6D01G245200.1	Wheat	plastid	61.93	59.73
TraesCS6A01G269700.1	Wheat	plastid	61.93	59.56
Solyc08g076360.2.1	Tomato	plastid	61.08	58.27
HORVU6Hr1G068410.1	Barley	plastid	60.51	57.72
TraesCS6B01G297000.1	Wheat	plastid	60.23	55.94
KXG22885	Sorghum	endoplasmic reticulum	52.27	54.28
CDY71885	Canola	extracellular	19.03	18.82
CDY51340	Canola	extracellular	19.03	18.82
CDX87642	Canola	endoplasmic reticulum, extracellular, plasma membrane	17.61	17.17
CDX73228	Canola	endoplasmic reticulum, extracellular, plasma membrane	17.33	16.94
CDX91102	Canola	mitochondrion, plastid	16.76	15.49

Protein Annotations

MapMan:10.3.2.6	Gene3D:3.40.50.150	GO:A0A078FPI0	UniProt:A0A078FPI0	EnsemblPlants:CDY16380	ProteinID:CDY16380
ProteinID:CDY16380.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009058	GO:GO:0009987	GO:GO:0010189	GO:GO:0016740	GO:GO:0032259	GO:GO:0051741
EnsemblPlantsGene:GSBRNA2T00090917001	InterPro:IPR025774	InterPro:MTs_g-TMT	InterPro:Methyltransf_11	PFAM:PF08241	PFscan:PS51581
PANTHER:PTHR43591	PANTHER:PTHR43591:SF25	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	UniPathway:UPA00160	UniParc:UPI0004EEF07A
SEG:seg	:	:	:	:	:

Description

BnaA02g11840DBnaA02g11840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPI0]

Coordinates

chrLK032063:-:275638..277878

Molecular Weight (calculated)

38830.7 Da

IEP (calculated)

7.501

GRAVY (calculated)

-0.089

Length

352 amino acids

Sequence
(BLAST)

001: MKATLAPSSL ISLPRHKVSS LRSPSLLLQS QRPSSALMTT TTASRGSVAV TAAATSSFEA LREGIAEFYN ETSGLWEEIW GDHMHHGFYD PDSSVQLSDS
101: GHREAQIRMI EESLRFAGVT EEEKKIKRVV DVGCGIGGSS RYIASKFGAE CIGITLSPVQ AKRANDLAAA QSLSHKVSFQ VADALEQPFE DGIFDLVWSM
201: ESGEHMPDKA KFVKELVRVA APGGRIIIVT WCHRNLSPGE EALQPWEQNL LDRICKTFYL PAWCSTSDYV DLLQSLSLQD IKCADWSENV APFWPAVIRT
301: ALTWKGLVSL LRSGMKSIKG ALTMPLMIEG YKKGVIKFGI ITCQKPLYKF NL

Best Arabidopsis Sequence Match ( AT1G64970.1 )
(BLAST)

001: MKATLAAPSS LTSLPYRTNS SFGSKSSLLF RSPSSSSSVS MTTTRGNVAV AAAATSTEAL RKGIAEFYNE TSGLWEEIWG DHMHHGFYDP DSSVQLSDSG
101: HKEAQIRMIE ESLRFAGVTD EEEEKKIKKV VDVGCGIGGS SRYLASKFGA ECIGITLSPV QAKRANDLAA AQSLAHKASF QVADALDQPF EDGKFDLVWS
201: MESGEHMPDK AKFVKELVRV AAPGGRIIIV TWCHRNLSAG EEALQPWEQN ILDKICKTFY LPAWCSTDDY VNLLQSHSLQ DIKCADWSEN VAPFWPAVIR
301: TALTWKGLVS LLRSGMKSIK GALTMPLMIE GYKKGVIKFG IITCQKPL

Arabidopsis Description

VTE4Tocopherol O-methyltransferase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.