Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G109840.6 | Barley | cytosol | 67.12 | 84.12 |
| Os03t0807600-00 | Rice | plasma membrane | 47.17 | 67.05 |
| TraesCS4D01G336800.1 | Wheat | cytosol | 60.11 | 64.83 |
| EER93245 | Sorghum | cytosol | 57.41 | 60.86 |
| KXG37308 | Sorghum | cytosol | 57.14 | 60.23 |
| Os11t0296900-00 | Rice | cytosol | 30.73 | 60.0 |
| Zm00001d013035_P004 | Maize | cytosol | 56.87 | 59.44 |
| EER90688 | Sorghum | cytosol | 53.1 | 58.46 |
| Zm00001d013037_P003 | Maize | cytosol | 36.66 | 43.45 |
| Zm00001d044846_P001 | Maize | cytosol | 16.44 | 42.96 |
| TraesCS1D01G208000.1 | Wheat | endoplasmic reticulum | 31.81 | 32.51 |
| TraesCS4D01G329300.1 | Wheat | endoplasmic reticulum, extracellular | 31.54 | 32.14 |
| TraesCS6D01G245200.1 | Wheat | plastid | 15.9 | 16.16 |
Protein Annotations
| Gene3D:3.40.50.150 | MapMan:5.5.1.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 | GO:GO:0006694 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009058 | GO:GO:0016740 | InterPro:IPR030384 |
| InterPro:MeTrfase_SMT | InterPro:Methyltransf_11 | PFAM:PF08241 | PFAM:PF08498 | PFscan:PS51685 | InterPro:SAM-dependent_MTases |
| SUPFAM:SSF53335 | InterPro:Sterol_MeTrfase_C | EnsemblPlantsGene:TraesCS5D01G469400 | EnsemblPlants:TraesCS5D01G469400.1 | TIGR:cd02440 | SEG:seg |
Description
No Description!
Coordinates
chr5D:-:510475142..510477186
Molecular Weight (calculated)
40967.8 Da
IEP (calculated)
6.581
GRAVY (calculated)
-0.213
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRTGALHLA SGLGGLIGKE QVKSSVEQYE KYHDLHGGEA KSRASNYADV ANKYYDLVTS FYEYGWGESF HFANRWEGET LRESIKRYEH FIALQLGLTD
101: GMKVLDVGCG IGGPLREIAR FSSASVTGLN NNEYQITRGQ ELIDLAGLSK RCNFVKGDFM HMPFPDDTFD AAYAIEATCH APDAVQYFHV QDCQSQLYFI
201: SLTVCTSPWQ VGCYMEIHRV LRPGQPMAFY EWCMTERFDP GNPRHVAAKA EIELGNGLID IRTTAQCLQA VKDAGFEVGA SVSHLWTPDA GASWTSANGF
301: RLSRVGRLVT RAMVKAMERL GVAPEGSVRV SGLMETAGEG LVKGGREGIF TPMFFVLARK KPNLLTGTEN V
101: GMKVLDVGCG IGGPLREIAR FSSASVTGLN NNEYQITRGQ ELIDLAGLSK RCNFVKGDFM HMPFPDDTFD AAYAIEATCH APDAVQYFHV QDCQSQLYFI
201: SLTVCTSPWQ VGCYMEIHRV LRPGQPMAFY EWCMTERFDP GNPRHVAAKA EIELGNGLID IRTTAQCLQA VKDAGFEVGA SVSHLWTPDA GASWTSANGF
301: RLSRVGRLVT RAMVKAMERL GVAPEGSVRV SGLMETAGEG LVKGGREGIF TPMFFVLARK KPNLLTGTEN V
001: MDLASNLGGK IDKSDVLTAV EKYEQYHVFH GGNEEERKAN YTDMVNKYYD LATSFYEYGW GESFHFAQRW KGESLRESIK RHEHFLALQL GIQPGQKVLD
101: VGCGIGGPLR EIARFSNSVV TGLNNNEYQI TRGKELNRLA GVDKTCNFVK ADFMKMPFPE NSFDAVYAIE ATCHAPDAYG CYKEIYRVLK PGQCFAAYEW
201: CMTDAFDPDN AEHQKIKGEI EIGDGLPDIR LTTKCLEALK QAGFEVIWEK DLAKDSPVPW YLPLDKNHFS LSSFRLTAVG RFITKNMVKI LEYIRLAPQG
301: SQRVSNFLEQ AAEGLVDGGR REIFTPMYFF LARKPE
101: VGCGIGGPLR EIARFSNSVV TGLNNNEYQI TRGKELNRLA GVDKTCNFVK ADFMKMPFPE NSFDAVYAIE ATCHAPDAYG CYKEIYRVLK PGQCFAAYEW
201: CMTDAFDPDN AEHQKIKGEI EIGDGLPDIR LTTKCLEALK QAGFEVIWEK DLAKDSPVPW YLPLDKNHFS LSSFRLTAVG RFITKNMVKI LEYIRLAPQG
301: SQRVSNFLEQ AAEGLVDGGR REIFTPMYFF LARKPE
Arabidopsis Description
SMT1Cycloartenol-C-24-methyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9LM02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.