Factsheet for PGSC0003DMT400078290

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 5
golgi 6
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000230
PGSC0003DMT400011903
PGSC0003DMT400011904
PGSC0003DMT400013490
PGSC0003DMT400013956
PGSC0003DMT400015793
PGSC0003DMT400019164
PGSC0003DMT400029745
PGSC0003DMT400032086
PGSC0003DMT400037158
PGSC0003DMT400047688
PGSC0003DMT400047969
PGSC0003DMT400048727
PGSC0003DMT400049928
PGSC0003DMT400060862
PGSC0003DMT400060959
PGSC0003DMT400063187
PGSC0003DMT400072932
PGSC0003DMT400078288	endoplasmic reticulum
PGSC0003DMT400078290	endoplasmic reticulum
PGSC0003DMT400093662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30490.1	PGSC0003DMT400047969	AT1G20330.1	23175744
AT2G30490.1	PGSC0003DMT400048727	AT1G20330.1	23175744
AT2G30490.1	PGSC0003DMT400093662	AT1G20330.1	23175744
AT2G30490.1	PGSC0003DMT400011903	AT1G51570.1	23175744
AT2G30490.1	PGSC0003DMT400011904	AT1G51570.1	23175744
AT2G30490.1	PGSC0003DMT400013490	AT1G51570.1	23175744
AT2G30490.1	PGSC0003DMT400029745	AT1G51570.1	23175744
AT2G30490.1	PGSC0003DMT400060862	AT1G51570.1	23175744
AT2G30490.1	PGSC0003DMT400060959	AT1G51570.1	23175744
AT2G30490.1	PGSC0003DMT400032086	AT1G64090.2	23175744
AT2G30490.1	PGSC0003DMT400072932	AT2G03510.1	23175744
AT2G30490.1	PGSC0003DMT400015793	AT2G20990.3	23175744
AT2G30490.1	PGSC0003DMT400078288	AT2G30490.1	23175744
AT2G30490.1	PGSC0003DMT400078290	AT2G30490.1	23175744
AT2G30490.1	PGSC0003DMT400078288	AT2G30490.1	23175744
AT2G30490.1	PGSC0003DMT400078290	AT2G30490.1	23175744
AT2G30490.1	PGSC0003DMT400000230	AT2G46170.1	23175744
AT2G30490.1	PGSC0003DMT400049928	AT2G46170.1	23175744
AT2G30490.1	PGSC0003DMT400063187	AT3G48100.1	18642946
AT2G30490.1	PGSC0003DMT400037158	AT3G48890.1	23175744
AT2G30490.1	PGSC0003DMT400019164	AT5G22460.1	23175744
AT2G30490.1	PGSC0003DMT400032086	AT5G41600.1	23175744
AT2G30490.1	PGSC0003DMT400013956	AT5G53560.1	23175744
AT2G30490.1	PGSC0003DMT400047688	AT5G53560.1	23175744

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078288	Potato	cytosol	62.77	99.06
KRH72830	Soybean	endoplasmic reticulum	88.12	87.94
Bra018311.1-P	Field mustard	extracellular, golgi, plasma membrane	87.52	87.52
KRH17200	Soybean	endoplasmic reticulum	87.52	87.52
CDY10741	Canola	extracellular, golgi, plasma membrane	87.52	87.52
CDY02068	Canola	extracellular, golgi, plasma membrane	87.13	87.13
Bra021637.1-P	Field mustard	extracellular, golgi, plasma membrane	86.53	86.53
CDX97826	Canola	extracellular, golgi, plasma membrane	86.34	86.34
CDY29670	Canola	extracellular, golgi, plasma membrane	86.34	86.34
CDX84829	Canola	extracellular, golgi, plasma membrane	86.34	86.34
Bra022803.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	86.14	86.14
CDY23995	Canola	extracellular, golgi, plasma membrane	85.94	85.94
VIT_06s0004g08150.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	85.94	85.94
AT2G30490.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	85.94	85.94
EES03803	Sorghum	endoplasmic reticulum, golgi	83.96	83.96
HORVU3Hr1G080830.1	Barley	endoplasmic reticulum	82.77	82.77
Zm00001d012510_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	62.77	82.55
TraesCS3A01G342900.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	81.58	81.42
TraesCS3B01G375100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	81.58	81.42
TraesCS3D01G336900.2	Wheat	endoplasmic reticulum	81.39	81.23
CDX84830	Canola	endoplasmic reticulum, golgi, plasma membrane	80.79	81.11
Bra022802.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	80.0	80.32
CDY23996	Canola	endoplasmic reticulum, extracellular, plasma membrane	76.44	80.25
Bra021636.1-P	Field mustard	extracellular, golgi, plasma membrane	80.0	80.0
CDY29671	Canola	extracellular, golgi, plasma membrane	79.8	79.8
CDX97827	Canola	endoplasmic reticulum, golgi, plasma membrane	79.6	79.6
TraesCS2D01G300200.1	Wheat	endoplasmic reticulum	73.07	72.92
TraesCS2B01G317700.1	Wheat	endoplasmic reticulum, golgi	44.55	69.66
PGSC0003DMT400035590	Potato	cytosol, plasma membrane	59.41	67.57
Os01t0820000-00	Rice	plasma membrane	28.91	43.84

Protein Annotations

Gene3D:1.10.630.10	MapMan:9.2.1.2	ProteinID:ABC69046	ProteinID:ABC69046.1	InterPro:Cyt_P450	InterPro:Cyt_P450_CS
InterPro:Cyt_P450_E_grp-I	InterPro:Cyt_P450_sf	EMBL:DQ341174	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497
GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0016705	GO:GO:0016710	GO:GO:0020037	GO:GO:0046872
GO:GO:0055114	InterPro:IPR036396	UniProt:M1CZT6	PFAM:PF00067	EnsemblPlantsGene:PGSC0003DMG402030469	PGSC:PGSC0003DMG402030469
EnsemblPlants:PGSC0003DMT400078290	PRINTS:PR00385	PRINTS:PR00463	ScanProsite:PS00086	PANTHER:PTHR24298	PANTHER:PTHR24298:SF56
SUPFAM:SSF48264	TMHMM:TMhelix	UniParc:UPI00029562C5	SEG:seg	:	:

Description

Cinnamic acid 4-hydroxylase [Source:PGSC_GENE;Acc:PGSC0003DMG402030469]

Coordinates

chr6:-:57651027..57653984

Molecular Weight (calculated)

58176.2 Da

IEP (calculated)

9.723

GRAVY (calculated)

-0.223

Length

505 amino acids

Sequence
(BLAST)

001: MDLLLLEKTL IGLFFAILIA IIVSKLRSKR FKLPPGPIPV PVFGNWLQVG DDLNHRNLTE YAKKFGDVFL LRMGQRNLVV VSSPELAKEV LHTQGVEFGS
101: RTRNVVFDIF TGKGQDMVFT VYGEHWRKMR RIMTVPFFTN KVVQQYRGGW ESEAASVVED VKKNPESATN GIVLRKRLQL MMYNNMFRIM FDRRFESEDD
201: PLFVKLRALN GERSRLAQSF EYNYGDFIPI LRPFLRGYLK ICKEVKEKRL KLFKDYFVDE RKKLANTKSM DSNALKCAID HILEAQQKGE INEDNVLYIV
301: ENINVAAIET TLWSIEWGIA ELVNHPHIQK KLRDEIDTVL GPGMQVTEPD MPKLPYLQAV IKETLRLRMA IPLLVPHMNL HDAKLAGYDI PAESKILVNA
401: WWLANDPAHW KKPEEFRPER FFEEEKHVEA NGNDFRFLPF GVGRRSCPGI ILALPILGIT LGRLVQNFEM LPPPGQSKLD TSEKGGQFSL HILKHSTIVM
501: KPRSF

Best Arabidopsis Sequence Match ( AT2G30490.1 )
(BLAST)

001: MDLLLLEKSL IAVFVAVILA TVISKLRGKK LKLPPGPIPI PIFGNWLQVG DDLNHRNLVD YAKKFGDLFL LRMGQRNLVV VSSPDLTKEV LLTQGVEFGS
101: RTRNVVFDIF TGKGQDMVFT VYGEHWRKMR RIMTVPFFTN KVVQQNREGW EFEAASVVED VKKNPDSATK GIVLRKRLQL MMYNNMFRIM FDRRFESEDD
201: PLFLRLKALN GERSRLAQSF EYNYGDFIPI LRPFLRGYLK ICQDVKDRRI ALFKKYFVDE RKQIASSKPT GSEGLKCAID HILEAEQKGE INEDNVLYIV
301: ENINVAAIET TLWSIEWGIA ELVNHPEIQS KLRNELDTVL GPGVQVTEPD LHKLPYLQAV VKETLRLRMA IPLLVPHMNL HDAKLAGYDI PAESKILVNA
401: WWLANNPNSW KKPEEFRPER FFEEESHVEA NGNDFRYVPF GVGRRSCPGI ILALPILGIT IGRMVQNFEL LPPPGQSKVD TSEKGGQFSL HILNHSIIVM
501: KPRNC

Arabidopsis Description

CYP73A5Cinnamate-4-hydroxylase [Source:UniProtKB/TrEMBL;Acc:B1GV49]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.