Factsheet for VIT_00s0508g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17240.1	VIT_17s0000g07580.t01	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g012610.1.1	Tomato	nucleus, plastid	58.42	61.14
PGSC0003DMT400034766	Potato	nucleus, plastid	57.92	60.47
KRH36578	Soybean	plastid	54.21	57.18
KRH11556	Soybean	nucleus, plastid	54.46	56.85
Solyc04g014850.2.1	Tomato	plastid	53.47	56.25
PGSC0003DMT400060552	Potato	nucleus, plastid	53.22	55.99
CDY42970	Canola	nucleus, plastid	43.32	52.4
CDY35588	Canola	nucleus, plastid	43.32	52.24
Bra026238.1-P	Field mustard	nucleus, plastid	42.82	52.11
AT4G17240.1	Thale cress	nucleus, plastid	43.32	51.02
GSMUA_Achr2P21490_001	Banana	plastid	36.39	49.0
GSMUA_Achr11P...	Banana	plastid	30.94	48.08
Bra030205.1-P	Field mustard	plastid	29.7	47.06
CDY16233	Canola	cytosol	14.6	46.09
HORVU5Hr1G095310.1	Barley	plastid	31.93	45.74
Os05t0547100-01	Rice	plastid	16.34	45.52
Os03t0750900-00	Rice	plastid	24.26	44.95
GSMUA_Achr2P21500_001	Banana	extracellular	16.83	43.04
TraesCS5B01G395300.1	Wheat	nucleus, plastid	36.39	41.06
TraesCS5A01G390400.1	Wheat	nucleus, plastid	36.39	40.95
TraesCS5D01G400200.1	Wheat	nucleus	35.64	40.11
Zm00001d036633_P002	Maize	cytosol, plastid	11.14	39.47
EER90867	Sorghum	plastid	35.89	36.34
Zm00001d021076_P001	Maize	cytosol, plastid	14.36	28.71

Protein Annotations

ArrayExpress:VIT_00s0508g00040	EMBL:AM460534	EMBL:FN596540	EnsemblPlants:VIT_00s0508g00040.t01	EnsemblPlantsGene:VIT_00s0508g00040	EntrezGene:100256556
EntrezGene:LOC100256556	ncoils:Coil	PANTHER:PTHR35493	ProteinID:CAN83274	ProteinID:CAN83274.1	ProteinID:CCB61077
ProteinID:CCB61077.1	RefSeq:XP_002269165	RefSeq:XP_002269165.1	SEG:seg	UniParc:UPI000198606D	UniProt:F6I2B0
wikigene:100256556	wikigene:LOC100256556	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chrUn:-:30924809..30927834

Molecular Weight (calculated)

45079.1 Da

IEP (calculated)

9.684

GRAVY (calculated)

-0.809

Length

404 amino acids

Sequence
(BLAST)

001: MAPIKSASRY DSFDARSSAS SQFSDPSSSV ELNKNQRFVA PSKSHPPESS SRALALARTK SSDLAPAKVK NEQNLSAMVK KFMEKRSSKP KAASTNRNGL
101: FVPADFIAED LKKTARKGTS FSGLHRKLFS KGSGSSGSSG SSRGEKSEVK ALTEVKANTR TLAMVLRSER ELLSQNKEQE MEITELKLVI EEKNREVEKL
201: KDLCLKQREE IKSLKSAILF PDVMNSHLQD LLDKQGSELK QAKQLIPTLQ KQVTSLTGQL QCLAEDLAEV KADKYSVRAC FQGHCSSPRT PTYDQDEATN
301: SLDFSSEDPA TPGSPDDMFL KDLNPCLTPY YAKTKSKEFE VDYDSPPHER LYENNLQFNS RVRKMSRSSE CSQNSNVASI AVRATRRSDE SKHTYGKPMH
401: HKLY

Best Arabidopsis Sequence Match ( AT4G17240.1 )
(BLAST)

001: MASRYNSYDS RSSVTSSIHS DLSSSAEFKS NKPISSKAIV RSKSSYLTKT TKPIKPDSNP GNLTNMMKKL MEMKKSNSKS KRVELVIPEE LKKIDTGKGG
101: GKSTLGTLQR KLFGKEKVKA LTEVKSNTRT LSMVLRSERE LLGMNKDQEV EIAELKFQLE EKNREVEKLK DLCLKQREEI KSLKSAVLFP DSMNSQINQM
201: QELNQAREII PNLQKQVISL NGQLQCIAQD LAEVKANKYL SESCYWQAQT SSYDSLEFSS GSPDGLALED LNPCLTPYTK KKPKEYERVD SAEESLSGRS
301: TITTTGGKVK SSSRSVKMSR SSEGKAGQRS EESKGWYRGG RMF

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: A /.../- 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). [Source:TAIR;Acc:AT4G17240]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.