CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY21807
CDY36905
CDY54257
CDY59856
CDY68129
CDY70164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17240.1	CDY21807	AT3G48100.1	18642946
AT4G17240.1	CDY36905	AT3G48100.1	18642946
AT4G17240.1	CDY54257	AT3G48100.1	18642946
AT4G17240.1	CDY59856	AT3G48100.1	18642946
AT4G17240.1	CDY68129	AT3G48100.1	18642946
AT4G17240.1	CDY70164	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42970	Canola	nucleus, plastid	96.72	97.01
AT4G17240.1	Thale cress	nucleus, plastid	86.57	84.55
CDY16233	Canola	cytosol	19.1	50.0
KRH36578	Soybean	plastid	51.34	44.91
KRH11556	Soybean	nucleus, plastid	51.64	44.7
Os03t0750900-00	Rice	plastid	28.36	43.58
VIT_00s0508g00040.t01	Wine grape	plastid	52.24	43.32
Os05t0547100-01	Rice	plastid	18.51	42.76
Solyc11g012610.1.1	Tomato	nucleus, plastid	49.25	42.75
Solyc04g014850.2.1	Tomato	plastid	48.66	42.45
PGSC0003DMT400060552	Potato	nucleus, plastid	48.36	42.19
PGSC0003DMT400034766	Potato	nucleus, plastid	47.76	41.34
GSMUA_Achr2P21490_001	Banana	plastid	34.93	39.0
HORVU5Hr1G095310.1	Barley	plastid	32.24	38.3
GSMUA_Achr11P...	Banana	plastid	29.55	38.08
TraesCS5A01G390400.1	Wheat	nucleus, plastid	38.81	36.21
TraesCS5B01G395300.1	Wheat	nucleus, plastid	38.51	36.03
TraesCS5D01G400200.1	Wheat	nucleus	38.21	35.65
EER90867	Sorghum	plastid	40.0	33.58
Zm00001d036633_P002	Maize	cytosol, plastid	11.04	32.46
GSMUA_Achr2P21500_001	Banana	extracellular	11.94	25.32
Zm00001d021076_P001	Maize	cytosol, plastid	14.93	24.75

Protein Annotations

EnsemblPlants:CDY35588	EnsemblPlantsGene:GSBRNA2T00058939001	ncoils:Coil	PANTHER:PTHR35493	ProteinID:CDY35588	ProteinID:CDY35588.1
SEG:seg	UniParc:UPI00006C6098	UniProt:A0A078HFK4	MapMan:35.2	:	:

Description

BnaC01g21100DBnaC01g21100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFK4]

Coordinates

chrLK032356:+:44742..46611

Molecular Weight (calculated)

37422.7 Da

IEP (calculated)

10.142

GRAVY (calculated)

-0.830

Length

335 amino acids

Sequence
(BLAST)

001: MASRYNSYDS RSSVTSSIQS DPSSSAEFKS SKAIVRSKPS YLTKTAKHDA NPGNLTCMMK KLMDMKKSNP KGKRVELVIP HELKKLDTVR GGGGKGALGT
101: LQRKLFGKEK EKVKALTEVK GNTRTLSMVL RSERELLSMN KDQEIEISEL KFQLEEKNRE VEKLKDLCLK QREEIKSLKS ALLFPDGMNS EMQELNEARQ
201: IIPNLQKQVL SLNGQLQCIA QDLAEVKANK YISESCYWQA QTSSYDSLEF SSGSPDRLAL EDLNPCLTPY AKKKPKDFER VDSAEESLSG RSTVTNTGGK
301: GKSSSKSVKM SRSSEGKAGR RSEESKGWHR GGRMF

Best Arabidopsis Sequence Match ( AT4G17240.1 )
(BLAST)

001: MASRYNSYDS RSSVTSSIHS DLSSSAEFKS NKPISSKAIV RSKSSYLTKT TKPIKPDSNP GNLTNMMKKL MEMKKSNSKS KRVELVIPEE LKKIDTGKGG
101: GKSTLGTLQR KLFGKEKVKA LTEVKSNTRT LSMVLRSERE LLGMNKDQEV EIAELKFQLE EKNREVEKLK DLCLKQREEI KSLKSAVLFP DSMNSQINQM
201: QELNQAREII PNLQKQVISL NGQLQCIAQD LAEVKANKYL SESCYWQAQT SSYDSLEFSS GSPDGLALED LNPCLTPYTK KKPKEYERVD SAEESLSGRS
301: TITTTGGKVK SSSRSVKMSR SSEGKAGQRS EESKGWYRGG RMF

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: A /.../- 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). [Source:TAIR;Acc:AT4G17240]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.