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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 1
  • cytosol 1
  • nucleus 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G17240.1 Solyc03g113720.2.1 AT3G48100.1 18642946
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400060552 Potato nucleus, plastid 92.45 92.45
Solyc11g012610.1.1 Tomato nucleus, plastid 64.84 64.51
VIT_00s0508g00040.t01 Wine grape plastid 56.25 53.47
Bra026238.1-P Field mustard nucleus, plastid 42.45 49.1
CDY35588 Canola nucleus, plastid 42.45 48.66
KRH36578 Soybean plastid 48.44 48.56
CDY42970 Canola nucleus, plastid 42.19 48.5
AT4G17240.1 Thale cress nucleus, plastid 43.23 48.4
KRH11556 Soybean nucleus, plastid 48.7 48.32
GSMUA_Achr2P21490_001 Banana plastid 36.46 46.67
GSMUA_Achr11P... Banana plastid 30.21 44.62
HORVU5Hr1G095310.1 Barley plastid 32.55 44.33
Os05t0547100-01 Rice plastid 16.41 43.45
Os03t0750900-00 Rice plastid 23.96 42.2
CDY16233 Canola cytosol 14.06 42.19
Bra030205.1-P Field mustard plastid 27.34 41.18
TraesCS5B01G395300.1 Wheat nucleus, plastid 36.98 39.66
TraesCS5A01G390400.1 Wheat nucleus, plastid 36.72 39.28
TraesCS5D01G400200.1 Wheat nucleus 36.72 39.28
Zm00001d036633_P002 Maize cytosol, plastid 10.94 36.84
EER90867 Sorghum plastid 36.72 35.34
GSMUA_Achr2P21500_001 Banana extracellular 14.06 34.18
Zm00001d021076_P001 Maize cytosol, plastid 14.84 28.22
Protein Annotations
EnsemblPlants:Solyc04g014850.2.1EnsemblPlantsGene:Solyc04g014850.2ncoils:CoilPANTHER:PTHR35493SEG:segUniParc:UPI00027667E6
UniProt:K4BPY8MapMan:35.2::::
Description
No Description!
Coordinates
chr4:-:5078602..5082852
Molecular Weight (calculated)
42854.5 Da
IEP (calculated)
9.073
GRAVY (calculated)
-0.769
Length
384 amino acids
Sequence
(BLAST)
001: MASINPSYRY ANAATSSIDS LRSSSKSDPS SSTDLSPHPH NPHSSSHAIT RLHAPSTTRH NFGSLVKKLV EHKSGPSMKS KPKGELKLIV PADFVAKRGN
101: GLSALHKKLF KGVVKRDEGS EKTKKALTEV KANTRSLAMV LRSERELLSM NKEQENEIEE LKLVIEEKNK EVEKLKDLCL KQREEIRSLK NALLFPDVMN
201: SQLQELVEKQ GSELKQANQL IPSLQKQVTS LTGQLRCLAY DLAEVKADKY PLRGCYDSLD SSPRSPEYDQ EEAVNSLEFS SENTISPSSP DDMLLKDLNP
301: CLTPYSAKTK SKEFEFNSPD DKNLLRNNIQ VYHDTSYSYS SCASKVSKSS GCCQSSNAAN NSIRAARGSD ESKYTYRKQI HNMF
Best Arabidopsis Sequence Match ( AT4G17240.1 )
(BLAST)
001: MASRYNSYDS RSSVTSSIHS DLSSSAEFKS NKPISSKAIV RSKSSYLTKT TKPIKPDSNP GNLTNMMKKL MEMKKSNSKS KRVELVIPEE LKKIDTGKGG
101: GKSTLGTLQR KLFGKEKVKA LTEVKSNTRT LSMVLRSERE LLGMNKDQEV EIAELKFQLE EKNREVEKLK DLCLKQREEI KSLKSAVLFP DSMNSQINQM
201: QELNQAREII PNLQKQVISL NGQLQCIAQD LAEVKANKYL SESCYWQAQT SSYDSLEFSS GSPDGLALED LNPCLTPYTK KKPKEYERVD SAEESLSGRS
301: TITTTGGKVK SSSRSVKMSR SSEGKAGQRS EESKGWYRGG RMF
Arabidopsis Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: A /.../- 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). [Source:TAIR;Acc:AT4G17240]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.