Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G390400.1 | Wheat | nucleus, plastid | 95.26 | 95.26 |
| TraesCS5B01G395300.1 | Wheat | nucleus, plastid | 92.76 | 93.02 |
| HORVU5Hr1G095310.1 | Barley | plastid | 72.7 | 92.55 |
| Os03t0750900-00 | Rice | plastid | 46.8 | 77.06 |
| Os05t0547100-01 | Rice | plastid | 26.46 | 65.52 |
| EER90867 | Sorghum | plastid | 69.92 | 62.91 |
| Zm00001d036633_P002 | Maize | cytosol, plastid | 18.11 | 57.02 |
| Zm00001d021076_P001 | Maize | cytosol, plastid | 23.96 | 42.57 |
| CDY16233 | Canola | cytosol | 14.76 | 41.41 |
| GSMUA_Achr11P... | Banana | plastid | 29.8 | 41.15 |
| AT4G17240.1 | Thale cress | nucleus, plastid | 37.6 | 39.36 |
| Bra026238.1-P | Field mustard | nucleus, plastid | 35.38 | 38.25 |
| CDY35588 | Canola | nucleus, plastid | 35.65 | 38.21 |
| CDY42970 | Canola | nucleus, plastid | 35.38 | 38.02 |
| PGSC0003DMT400060552 | Potato | nucleus, plastid | 40.11 | 37.5 |
| Solyc04g014850.2.1 | Tomato | plastid | 39.28 | 36.72 |
| Bra030205.1-P | Field mustard | plastid | 25.91 | 36.47 |
| KRH36578 | Soybean | plastid | 38.72 | 36.29 |
| KRH11556 | Soybean | nucleus, plastid | 38.72 | 35.92 |
| VIT_00s0508g00040.t01 | Wine grape | plastid | 40.11 | 35.64 |
| Solyc11g012610.1.1 | Tomato | nucleus, plastid | 37.88 | 35.23 |
| PGSC0003DMT400034766 | Potato | nucleus, plastid | 37.05 | 34.37 |
| GSMUA_Achr2P21500_001 | Banana | extracellular | 15.04 | 34.18 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G400200.1 | EnsemblPlantsGene:TraesCS5D01G400200 | ncoils:Coil | PANTHER:PTHR35493 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr5D:-:465373643..465376352
Molecular Weight (calculated)
39380.3 Da
IEP (calculated)
9.438
GRAVY (calculated)
-0.835
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKAAAASRY ASYDDSPSPR RAGPAALAAA ASATPGQQHG SRALVAVRSG RGDLRCQAPQ PQQPHGNLGS VLRRLISMDK KPSAKTLLPV PPAAVAAPAK
101: NGSGAKLPGL SRKLFQKAPP EAKKKALTEV KNSGNANTRT LAMVLRSERE LLSQNKEQED EIAALRLQLQ QKDREVERLK DLCLRQREEI STLKDAVLFP
201: DTEPDRHVRD EISALTGQIQ CLADELAQVK AEKNTSRSCF DDEYCSSPST PVLNEETAFS LECSIGEAET PPNYGSPDEM FVKDLNPCLT PFSKSRSEEY
301: EESLSSHRSK ARPDPHLSSL RRRPMSKSSD HHHKPTSGTG SSKRRPHRSD QDKSCQNLF
101: NGSGAKLPGL SRKLFQKAPP EAKKKALTEV KNSGNANTRT LAMVLRSERE LLSQNKEQED EIAALRLQLQ QKDREVERLK DLCLRQREEI STLKDAVLFP
201: DTEPDRHVRD EISALTGQIQ CLADELAQVK AEKNTSRSCF DDEYCSSPST PVLNEETAFS LECSIGEAET PPNYGSPDEM FVKDLNPCLT PFSKSRSEEY
301: EESLSSHRSK ARPDPHLSSL RRRPMSKSSD HHHKPTSGTG SSKRRPHRSD QDKSCQNLF
001: MASRYNSYDS RSSVTSSIHS DLSSSAEFKS NKPISSKAIV RSKSSYLTKT TKPIKPDSNP GNLTNMMKKL MEMKKSNSKS KRVELVIPEE LKKIDTGKGG
101: GKSTLGTLQR KLFGKEKVKA LTEVKSNTRT LSMVLRSERE LLGMNKDQEV EIAELKFQLE EKNREVEKLK DLCLKQREEI KSLKSAVLFP DSMNSQINQM
201: QELNQAREII PNLQKQVISL NGQLQCIAQD LAEVKANKYL SESCYWQAQT SSYDSLEFSS GSPDGLALED LNPCLTPYTK KKPKEYERVD SAEESLSGRS
301: TITTTGGKVK SSSRSVKMSR SSEGKAGQRS EESKGWYRGG RMF
101: GKSTLGTLQR KLFGKEKVKA LTEVKSNTRT LSMVLRSERE LLGMNKDQEV EIAELKFQLE EKNREVEKLK DLCLKQREEI KSLKSAVLFP DSMNSQINQM
201: QELNQAREII PNLQKQVISL NGQLQCIAQD LAEVKANKYL SESCYWQAQT SSYDSLEFSS GSPDGLALED LNPCLTPYTK KKPKEYERVD SAEESLSGRS
301: TITTTGGKVK SSSRSVKMSR SSEGKAGQRS EESKGWYRGG RMF
Arabidopsis Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: A /.../- 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). [Source:TAIR;Acc:AT4G17240]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.