Factsheet for TraesCS5B01G395300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G390400.1	Wheat	nucleus, plastid	96.93	96.66
HORVU5Hr1G095310.1	Barley	plastid	73.18	92.91
TraesCS5D01G400200.1	Wheat	nucleus	93.02	92.76
Os03t0750900-00	Rice	plastid	49.72	81.65
Os05t0547100-01	Rice	plastid	27.65	68.28
EER90867	Sorghum	plastid	72.63	65.16
Zm00001d036633_P002	Maize	cytosol, plastid	18.44	57.89
Zm00001d021076_P001	Maize	cytosol, plastid	24.3	43.07
GSMUA_Achr11P...	Banana	plastid	30.17	41.54
CDY16233	Canola	cytosol	14.8	41.41
AT4G17240.1	Thale cress	nucleus, plastid	37.15	38.78
Bra026238.1-P	Field mustard	nucleus, plastid	35.75	38.55
CDY35588	Canola	nucleus, plastid	36.03	38.51
CDY42970	Canola	nucleus, plastid	35.75	38.32
PGSC0003DMT400060552	Potato	nucleus, plastid	40.78	38.02
Bra030205.1-P	Field mustard	plastid	26.54	37.25
KRH36578	Soybean	plastid	39.66	37.08
Solyc04g014850.2.1	Tomato	plastid	39.66	36.98
KRH11556	Soybean	nucleus, plastid	39.94	36.95
VIT_00s0508g00040.t01	Wine grape	plastid	41.06	36.39
Solyc11g012610.1.1	Tomato	nucleus, plastid	39.11	36.27
PGSC0003DMT400034766	Potato	nucleus, plastid	37.99	35.14
GSMUA_Achr2P21500_001	Banana	extracellular	15.36	34.81

Protein Annotations

EnsemblPlants:TraesCS5B01G395300.1

EnsemblPlantsGene:TraesCS5B01G395300

ncoils:Coil

PANTHER:PTHR35493

SEG:seg

MapMan:35.2

Description

No Description!

Coordinates

chr5B:-:572600731..572603404

Molecular Weight (calculated)

39081.8 Da

IEP (calculated)

9.265

GRAVY (calculated)

-0.838

Length

358 amino acids

Sequence
(BLAST)

001: MRKAAAASRY ASYDDSPSPS PSPRRAGPAA AAASGTPGQQ HGSRALVAVR SGRGDLRCQA PQPHGNLGSV LRRLISMDKK PSAKNLLPVP PAAAAAPAKN
101: GSGAKLPGLS RKLFQKAPPE AKKKALTEVK NSGNANTRTL AMVLRSEREL LSQSKEQEDE IAALRLQLEQ KDREVERLKD LCLRQREEIS TLKDAVLFPD
201: TQPDLHVRDE ISTLTGQIQC LAEELAQVKA EKNTPRSCFD DEYCSSPSTP VLNEETAFSL ECSIGEAETP PNYGSPDEMF VKDLNPCLTP FSKSRSEEYE
301: ESLSSHRSKA RPDPHLSSSR RRPVSKSSDH HHKPTSGTGS SKRRAHRSDQ DKSCQNLF

Best Arabidopsis Sequence Match ( AT4G17240.1 )
(BLAST)

001: MASRYNSYDS RSSVTSSIHS DLSSSAEFKS NKPISSKAIV RSKSSYLTKT TKPIKPDSNP GNLTNMMKKL MEMKKSNSKS KRVELVIPEE LKKIDTGKGG
101: GKSTLGTLQR KLFGKEKVKA LTEVKSNTRT LSMVLRSERE LLGMNKDQEV EIAELKFQLE EKNREVEKLK DLCLKQREEI KSLKSAVLFP DSMNSQINQM
201: QELNQAREII PNLQKQVISL NGQLQCIAQD LAEVKANKYL SESCYWQAQT SSYDSLEFSS GSPDGLALED LNPCLTPYTK KKPKEYERVD SAEESLSGRS
301: TITTTGGKVK SSSRSVKMSR SSEGKAGQRS EESKGWYRGG RMF

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: A /.../- 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). [Source:TAIR;Acc:AT4G17240]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.