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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • nucleus 1
  • mitochondrion 3
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os03t0750900-00 Rice plastid 67.59 44.95
HORVU5Hr1G095310.1 Barley plastid 65.52 33.69
TraesCS5B01G395300.1 Wheat nucleus, plastid 68.28 27.65
TraesCS5A01G390400.1 Wheat nucleus, plastid 65.52 26.46
TraesCS5D01G400200.1 Wheat nucleus 65.52 26.46
CDY16233 Canola cytosol 22.76 25.78
EER90867 Sorghum plastid 64.14 23.31
Bra030205.1-P Field mustard plastid 37.24 21.18
Zm00001d021076_P001 Maize cytosol, plastid 27.59 19.8
GSMUA_Achr11P... Banana plastid 34.48 19.23
Bra026238.1-P Field mustard nucleus, plastid 43.45 18.98
AT4G17240.1 Thale cress nucleus, plastid 44.14 18.66
CDY42970 Canola nucleus, plastid 42.76 18.56
CDY35588 Canola nucleus, plastid 42.76 18.51
PGSC0003DMT400060552 Potato nucleus, plastid 45.52 17.19
Solyc04g014850.2.1 Tomato plastid 43.45 16.41
VIT_00s0508g00040.t01 Wine grape plastid 45.52 16.34
KRH36578 Soybean plastid 42.76 16.19
Solyc11g012610.1.1 Tomato nucleus, plastid 42.76 16.06
KRH11556 Soybean nucleus, plastid 42.76 16.02
PGSC0003DMT400034766 Potato nucleus, plastid 42.07 15.76
Zm00001d036633_P002 Maize cytosol, plastid 11.72 14.91
GSMUA_Achr2P21500_001 Banana extracellular 4.83 4.43
Protein Annotations
EnsemblPlants:Os05t0547100-01EnsemblPlantsGene:Os05g0547100EntrezGene:4339506ncoils:CoilPANTHER:PTHR35493ProteinID:BAF18135.1
ProteinID:BAS95175.1RefSeq:XP_015639033.1UniParc:UPI0000E125C3UniProt:Q0DG88MapMan:35.2:
Description
Conserved hypothetical protein. (Os05t0547100-01)
Coordinates
chr5:+:27150614..27153702
Molecular Weight (calculated)
16214.8 Da
IEP (calculated)
10.271
GRAVY (calculated)
-0.332
Length
145 amino acids
Sequence
(BLAST)
001: MDKKPARNLT ACLAAIAGAV VNNSNGGKLP GLSRKLFQKA PSEHKKNALT EVKSGGNTRA LAMVLRGEWV DEIAALRLQF EQKDIEVERL KDLCLWQREE
101: IWTLKGAVFF PATQPDHNLT GQIQYLAEKI AVVKTKKHMP RSCMF
Best Arabidopsis Sequence Match ( AT4G17240.1 )
(BLAST)
001: MASRYNSYDS RSSVTSSIHS DLSSSAEFKS NKPISSKAIV RSKSSYLTKT TKPIKPDSNP GNLTNMMKKL MEMKKSNSKS KRVELVIPEE LKKIDTGKGG
101: GKSTLGTLQR KLFGKEKVKA LTEVKSNTRT LSMVLRSERE LLGMNKDQEV EIAELKFQLE EKNREVEKLK DLCLKQREEI KSLKSAVLFP DSMNSQINQM
201: QELNQAREII PNLQKQVISL NGQLQCIAQD LAEVKANKYL SESCYWQAQT SSYDSLEFSS GSPDGLALED LNPCLTPYTK KKPKEYERVD SAEESLSGRS
301: TITTTGGKVK SSSRSVKMSR SSEGKAGQRS EESKGWYRGG RMF
Arabidopsis Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: A /.../- 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). [Source:TAIR;Acc:AT4G17240]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.