Factsheet for Bra030205.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018084.1-P
Bra019524.1-P
Bra033773.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17240.1	Bra018084.1-P	AT3G48100.1	18642946
AT4G17240.1	Bra019524.1-P	AT3G48100.1	18642946
AT4G17240.1	Bra033773.1-P	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026238.1-P	Field mustard	nucleus, plastid	78.82	60.54
AT4G17240.1	Thale cress	nucleus, plastid	67.06	49.85
CDY16233	Canola	cytosol	23.92	47.66
Os03t0750900-00	Rice	plastid	32.94	38.53
Os05t0547100-01	Rice	plastid	21.18	37.24
KRH36578	Soybean	plastid	47.06	31.33
KRH11556	Soybean	nucleus, plastid	47.06	31.01
GSMUA_Achr2P21490_001	Banana	plastid	36.47	31.0
GSMUA_Achr11P...	Banana	plastid	30.98	30.38
VIT_00s0508g00040.t01	Wine grape	plastid	47.06	29.7
Solyc11g012610.1.1	Tomato	nucleus, plastid	42.75	28.24
PGSC0003DMT400034766	Potato	nucleus, plastid	41.96	27.65
Solyc04g014850.2.1	Tomato	plastid	41.18	27.34
PGSC0003DMT400060552	Potato	nucleus, plastid	40.78	27.08
HORVU5Hr1G095310.1	Barley	plastid	29.41	26.6
TraesCS5B01G395300.1	Wheat	nucleus, plastid	37.25	26.54
TraesCS5A01G390400.1	Wheat	nucleus, plastid	37.25	26.46
TraesCS5D01G400200.1	Wheat	nucleus	36.47	25.91
EER90867	Sorghum	plastid	38.43	24.56
Zm00001d036633_P002	Maize	cytosol, plastid	7.84	17.54
Zm00001d021076_P001	Maize	cytosol, plastid	12.55	15.84
GSMUA_Achr2P21500_001	Banana	extracellular	5.1	8.23

Protein Annotations

EnsemblPlants:Bra030205.1	EnsemblPlants:Bra030205.1-P	EnsemblPlantsGene:Bra030205	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009522	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	InterPro:PSAN	ncoils:Coil	PANTHER:PTHR35493	PFAM:PF05479	SEG:seg
UniParc:UPI00025443EE	UniProt:M4EN35	MapMan:35.2	:	:	:

Description

AT4G17240 (E=6e-073) | unknown protein

Coordinates

chrA04:+:10029416..10030892

Molecular Weight (calculated)

28294.2 Da

IEP (calculated)

10.327

GRAVY (calculated)

-0.587

Length

255 amino acids

Sequence
(BLAST)

001: MAARYNSYDS RSSVSSSIQS DPSSSAEFKS SKAIVRSKPS YLTKTAKHDT NPGNLTCMMK KLMDMKKSNP KGKRVELVIP HELKKLDTVR GGGKGALGTL
101: QRKLFGKEKV KALTEVKGNT RTLSMVLRSE RELLSMNKDQ EIEISELKFQ LEEKNREVEK LKDLCLKQRE EIKSLKSALL FPDGMNSEMQ ELNEEHTVPG
201: IKAVLRVGGD VVNGRRSAMV ILAATLFSST YGSASANAGV IDDFYERSKP TKVKS

Best Arabidopsis Sequence Match ( AT4G17240.1 )
(BLAST)

001: MASRYNSYDS RSSVTSSIHS DLSSSAEFKS NKPISSKAIV RSKSSYLTKT TKPIKPDSNP GNLTNMMKKL MEMKKSNSKS KRVELVIPEE LKKIDTGKGG
101: GKSTLGTLQR KLFGKEKVKA LTEVKSNTRT LSMVLRSERE LLGMNKDQEV EIAELKFQLE EKNREVEKLK DLCLKQREEI KSLKSAVLFP DSMNSQINQM
201: QELNQAREII PNLQKQVISL NGQLQCIAQD LAEVKANKYL SESCYWQAQT SSYDSLEFSS GSPDGLALED LNPCLTPYTK KKPKEYERVD SAEESLSGRS
301: TITTTGGKVK SSSRSVKMSR SSEGKAGQRS EESKGWYRGG RMF

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: A /.../- 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). [Source:TAIR;Acc:AT4G17240]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.