CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17240.1	KRH03376	AT3G48100.1	18642946
AT4G17240.1	KRH54462	AT3G48100.1	18642946
AT4G17240.1	KRH57009	AT3G48100.1	18642946
AT4G17240.1	KRH63457	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36578	Soybean	plastid	92.76	93.73
VIT_00s0508g00040.t01	Wine grape	plastid	56.85	54.46
Solyc11g012610.1.1	Tomato	nucleus, plastid	53.23	53.37
PGSC0003DMT400034766	Potato	nucleus, plastid	52.2	52.2
CDY35588	Canola	nucleus, plastid	44.7	51.64
Bra026238.1-P	Field mustard	nucleus, plastid	43.93	51.2
CDY42970	Canola	nucleus, plastid	44.19	51.2
PGSC0003DMT400060552	Potato	nucleus, plastid	49.35	49.74
AT4G17240.1	Thale cress	nucleus, plastid	43.41	48.98
Solyc04g014850.2.1	Tomato	plastid	48.32	48.7
Bra030205.1-P	Field mustard	plastid	31.01	47.06
GSMUA_Achr2P21490_001	Banana	plastid	35.4	45.67
CDY16233	Canola	cytosol	14.99	45.31
HORVU5Hr1G095310.1	Barley	plastid	32.56	44.68
Os03t0750900-00	Rice	plastid	25.06	44.5
Os05t0547100-01	Rice	plastid	16.02	42.76
GSMUA_Achr11P...	Banana	plastid	28.42	42.31
TraesCS5B01G395300.1	Wheat	nucleus, plastid	36.95	39.94
TraesCS5A01G390400.1	Wheat	nucleus, plastid	36.69	39.55
TraesCS5D01G400200.1	Wheat	nucleus	35.92	38.72
GSMUA_Achr2P21500_001	Banana	extracellular	14.47	35.44
Zm00001d036633_P002	Maize	cytosol, plastid	10.08	34.21
EER90867	Sorghum	plastid	35.14	34.09
Zm00001d021076_P001	Maize	cytosol, plastid	15.25	29.21

Protein Annotations

EMBL:ACUP02009215	EnsemblPlants:KRH11556	EnsemblPlantsGene:GLYMA_15G117000	EntrezGene:100811357	ncoils:Coil	PANTHER:PTHR35493
ProteinID:KRH11556	ProteinID:KRH11556.1	SEG:seg	UniParc:UPI000233ABCE	UniProt:I1MFQ4	MapMan:35.2

Description

hypothetical protein

Coordinates

chr15:-:9192797..9196335

Molecular Weight (calculated)

42797.5 Da

IEP (calculated)

10.060

GRAVY (calculated)

-0.798

Length

387 amino acids

Sequence
(BLAST)

001: MASGTVKPSS RYRSYDSRSS TSSHFSDPSS SHEFNNLKTK TSSSSSRALV KAKPSNTAKL DPTFTTMVKK FMDRKPKSSS SAAATATRLI IPSDFLAKDL
101: KKDAKKVAGF SALQKKLFGK GASEKKEKVK ALTEVKNNTR TLAMVLRSER ELLSINKEQE QQVSQLKQML EDKNKEVEKL KDLCLKQREE IKSLKSAILF
201: PDVMNSQLQE LLEKQGSELK QAKQVIPALQ QQVSSLTGQL QSLAEDLAEV KADKYSAKAG LPGYGSSPRT PTHAREDASN FWEFSSDDQP DDLLLNDLNP
301: CLTPCAVKSR SREFEGRGSG SMHDESLSDE DDAKVYPGMK FSSHDRKFSK SSDCCHNSSK ISVATKAGRR SDESKLAYGG RMNHKFA

Best Arabidopsis Sequence Match ( AT4G17240.1 )
(BLAST)

001: MASRYNSYDS RSSVTSSIHS DLSSSAEFKS NKPISSKAIV RSKSSYLTKT TKPIKPDSNP GNLTNMMKKL MEMKKSNSKS KRVELVIPEE LKKIDTGKGG
101: GKSTLGTLQR KLFGKEKVKA LTEVKSNTRT LSMVLRSERE LLGMNKDQEV EIAELKFQLE EKNREVEKLK DLCLKQREEI KSLKSAVLFP DSMNSQINQM
201: QELNQAREII PNLQKQVISL NGQLQCIAQD LAEVKANKYL SESCYWQAQT SSYDSLEFSS GSPDGLALED LNPCLTPYTK KKPKEYERVD SAEESLSGRS
301: TITTTGGKVK SSSRSVKMSR SSEGKAGQRS EESKGWYRGG RMF

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: A /.../- 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). [Source:TAIR;Acc:AT4G17240]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.