CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0750900-00	Rice	plastid	41.6	76.15
TraesCS5B01G395300.1	Wheat	nucleus, plastid	65.16	72.63
TraesCS5A01G390400.1	Wheat	nucleus, plastid	64.91	72.14
HORVU5Hr1G095310.1	Barley	plastid	50.63	71.63
TraesCS5D01G400200.1	Wheat	nucleus	62.91	69.92
Zm00001d036633_P002	Maize	cytosol, plastid	19.55	68.42
Os05t0547100-01	Rice	plastid	23.31	64.14
Zm00001d021076_P001	Maize	cytosol, plastid	26.57	52.48
CDY16233	Canola	cytosol	13.03	40.62
GSMUA_Achr11P...	Banana	plastid	26.32	40.38
CDY35588	Canola	nucleus, plastid	33.58	40.0
Bra026238.1-P	Field mustard	nucleus, plastid	33.08	39.76
CDY42970	Canola	nucleus, plastid	32.83	39.22
AT4G17240.1	Thale cress	nucleus, plastid	33.33	38.78
Bra030205.1-P	Field mustard	plastid	24.56	38.43
PGSC0003DMT400060552	Potato	nucleus, plastid	36.59	38.02
Solyc04g014850.2.1	Tomato	plastid	35.34	36.72
GSMUA_Achr2P21500_001	Banana	extracellular	14.54	36.71
Solyc11g012610.1.1	Tomato	nucleus, plastid	34.84	36.01
VIT_00s0508g00040.t01	Wine grape	plastid	36.34	35.89
PGSC0003DMT400034766	Potato	nucleus, plastid	34.59	35.66
KRH36578	Soybean	plastid	33.83	35.25
KRH11556	Soybean	nucleus, plastid	34.09	35.14

Protein Annotations

EnsemblPlants:EER90867	EnsemblPlantsGene:SORBI_3001G088000	EntrezGene:8086243	ncoils:Coil	PANTHER:PTHR35493	ProteinID:EER90867
ProteinID:EER90867.1	RefSeq:XP_002463869.1	SEG:seg	UniParc:UPI0001A82346	UniProt:C5X0B3	MapMan:35.2

Description

hypothetical protein

Coordinates

chr1:+:6845622..6848466

Molecular Weight (calculated)

43123.4 Da

IEP (calculated)

9.661

GRAVY (calculated)

-0.783

Length

399 amino acids

Sequence
(BLAST)

001: MKKASAASRY AAYDSPSPSP SPSPRRAAPS AAAATPGGAH CSSRALVVAG RSGRDLLGAK PQPQAHGNLG SVLRRLISMD KKPPSSKNHL PVPPAAAAAA
101: KNSGGGKLPG LSRKLFQKAS STEAAAPRKT KALTDVKNGG NNANTRTLGM VLRSERELLA QTKAQEDEIA ALRLQLENKD REVERLKDLC LRQREEIRTL
201: KDAVLFPDAD PEPEPDRRLR DEISTLTDQI QCLAQELAQV KAEKHSARSC FDEDGYCSSP RTPGFNEETA FSLECSIGEA ETPNYGSPDE MFSKDLNPCL
301: TPCIAKSKSD VSAQFQSSSQ FTKESSGSHR SSGKARADRS YNSFGRPMSK SSDHHKPTSG TSNKRRVYKS DHDKINQNLF SVHHHHELAT EGSLQLAAL

Best Arabidopsis Sequence Match ( AT4G17240.1 )
(BLAST)

001: MASRYNSYDS RSSVTSSIHS DLSSSAEFKS NKPISSKAIV RSKSSYLTKT TKPIKPDSNP GNLTNMMKKL MEMKKSNSKS KRVELVIPEE LKKIDTGKGG
101: GKSTLGTLQR KLFGKEKVKA LTEVKSNTRT LSMVLRSERE LLGMNKDQEV EIAELKFQLE EKNREVEKLK DLCLKQREEI KSLKSAVLFP DSMNSQINQM
201: QELNQAREII PNLQKQVISL NGQLQCIAQD LAEVKANKYL SESCYWQAQT SSYDSLEFSS GSPDGLALED LNPCLTPYTK KKPKEYERVD SAEESLSGRS
301: TITTTGGKVK SSSRSVKMSR SSEGKAGQRS EESKGWYRGG RMF

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: A /.../- 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). [Source:TAIR;Acc:AT4G17240]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.