CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY21807
CDY36905
CDY54257
CDY59856
CDY68129
CDY70164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17240.1	CDY21807	AT3G48100.1	18642946
AT4G17240.1	CDY36905	AT3G48100.1	18642946
AT4G17240.1	CDY54257	AT3G48100.1	18642946
AT4G17240.1	CDY59856	AT3G48100.1	18642946
AT4G17240.1	CDY68129	AT3G48100.1	18642946
AT4G17240.1	CDY70164	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030205.1-P	Field mustard	plastid	47.66	23.92
Os05t0547100-01	Rice	plastid	25.78	22.76
Os03t0750900-00	Rice	plastid	34.38	20.18
CDY42970	Canola	nucleus, plastid	50.0	19.16
CDY35588	Canola	nucleus, plastid	50.0	19.1
HORVU5Hr1G095310.1	Barley	plastid	41.41	18.79
AT4G17240.1	Thale cress	nucleus, plastid	45.31	16.91
GSMUA_Achr11P...	Banana	plastid	33.59	16.54
GSMUA_Achr2P21490_001	Banana	plastid	35.94	15.33
KRH36578	Soybean	plastid	45.31	15.14
TraesCS5A01G390400.1	Wheat	nucleus, plastid	42.19	15.04
KRH11556	Soybean	nucleus, plastid	45.31	14.99
TraesCS5B01G395300.1	Wheat	nucleus, plastid	41.41	14.8
TraesCS5D01G400200.1	Wheat	nucleus	41.41	14.76
VIT_00s0508g00040.t01	Wine grape	plastid	46.09	14.6
PGSC0003DMT400060552	Potato	nucleus, plastid	42.97	14.32
Solyc04g014850.2.1	Tomato	plastid	42.19	14.06
Solyc11g012610.1.1	Tomato	nucleus, plastid	42.19	13.99
PGSC0003DMT400034766	Potato	nucleus, plastid	42.19	13.95
EER90867	Sorghum	plastid	40.62	13.03
Zm00001d036633_P002	Maize	cytosol, plastid	10.16	11.4
Zm00001d021076_P001	Maize	cytosol, plastid	16.41	10.4
GSMUA_Achr2P21500_001	Banana	extracellular	7.81	6.33

Protein Annotations

EnsemblPlants:CDY16233	EnsemblPlantsGene:GSBRNA2T00090693001	ncoils:Coil	PANTHER:PTHR35493	ProteinID:CDY16233	ProteinID:CDY16233.1
SEG:seg	UniParc:UPI0004EEA837	UniProt:A0A078FV03	MapMan:35.2	:	:

Description

BnaA09g29670DBnaA09g29670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FV03]

Coordinates

chrLK032061:+:670243..671332

Molecular Weight (calculated)

14743.1 Da

IEP (calculated)

10.658

GRAVY (calculated)

-0.481

Length

128 amino acids

Sequence
(BLAST)

001: MTKLFSKEKK KSKALAEVKG STRTLSMVLR SERELLSMNK DQEISISELK FQLEDKNQEV EKLKDLCLKQ GGDKVEGTFV PMLWTVKCRS SMRRGRSSMT
101: FKSSFFHSMA SSNAFLKTLL RYSVFFHG

Best Arabidopsis Sequence Match ( AT4G17240.1 )
(BLAST)

001: MASRYNSYDS RSSVTSSIHS DLSSSAEFKS NKPISSKAIV RSKSSYLTKT TKPIKPDSNP GNLTNMMKKL MEMKKSNSKS KRVELVIPEE LKKIDTGKGG
101: GKSTLGTLQR KLFGKEKVKA LTEVKSNTRT LSMVLRSERE LLGMNKDQEV EIAELKFQLE EKNREVEKLK DLCLKQREEI KSLKSAVLFP DSMNSQINQM
201: QELNQAREII PNLQKQVISL NGQLQCIAQD LAEVKANKYL SESCYWQAQT SSYDSLEFSS GSPDGLALED LNPCLTPYTK KKPKEYERVD SAEESLSGRS
301: TITTTGGKVK SSSRSVKMSR SSEGKAGQRS EESKGWYRGG RMF

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: A /.../- 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). [Source:TAIR;Acc:AT4G17240]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.