CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17240.1	KRH03376	AT3G48100.1	18642946
AT4G17240.1	KRH54462	AT3G48100.1	18642946
AT4G17240.1	KRH57009	AT3G48100.1	18642946
AT4G17240.1	KRH63457	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11556	Soybean	nucleus, plastid	93.73	92.76
VIT_00s0508g00040.t01	Wine grape	plastid	57.18	54.21
Solyc11g012610.1.1	Tomato	nucleus, plastid	54.05	53.63
PGSC0003DMT400034766	Potato	nucleus, plastid	53.0	52.45
CDY35588	Canola	nucleus, plastid	44.91	51.34
Bra026238.1-P	Field mustard	nucleus, plastid	44.13	50.9
CDY42970	Canola	nucleus, plastid	44.39	50.9
PGSC0003DMT400060552	Potato	nucleus, plastid	49.61	49.48
AT4G17240.1	Thale cress	nucleus, plastid	43.6	48.69
Solyc04g014850.2.1	Tomato	plastid	48.56	48.44
Bra030205.1-P	Field mustard	plastid	31.33	47.06
GSMUA_Achr2P21490_001	Banana	plastid	35.77	45.67
CDY16233	Canola	cytosol	15.14	45.31
Os03t0750900-00	Rice	plastid	25.59	44.95
HORVU5Hr1G095310.1	Barley	plastid	32.64	44.33
Os05t0547100-01	Rice	plastid	16.19	42.76
GSMUA_Achr11P...	Banana	plastid	28.46	41.92
TraesCS5B01G395300.1	Wheat	nucleus, plastid	37.08	39.66
TraesCS5A01G390400.1	Wheat	nucleus, plastid	36.81	39.28
TraesCS5D01G400200.1	Wheat	nucleus	36.29	38.72
GSMUA_Achr2P21500_001	Banana	extracellular	14.36	34.81
EER90867	Sorghum	plastid	35.25	33.83
Zm00001d036633_P002	Maize	cytosol, plastid	9.66	32.46
Zm00001d021076_P001	Maize	cytosol, plastid	15.14	28.71

Protein Annotations

EMBL:ACUP02005382	EnsemblPlants:KRH36578	EnsemblPlantsGene:GLYMA_09G012400	EntrezGene:100785215	ncoils:Coil	PANTHER:PTHR35493
ProteinID:KRH36578	ProteinID:KRH36578.1	SEG:seg	UniParc:UPI000233CD87	UniProt:I1L018	MapMan:35.2

Description

hypothetical protein

Coordinates

chr9:-:944435..947270

Molecular Weight (calculated)

42567.2 Da

IEP (calculated)

9.925

GRAVY (calculated)

-0.787

Length

383 amino acids

Sequence
(BLAST)

001: MASRVKPSSR YSSYDSRSST SSHFSDPSSS HEFNNLKTKT SSSSSSSRAL VKAKPSNTAK VDPTFTTMVK KFMDRKPKSS TATRLIIPSD SLAKDLKKDA
101: KKVAGFSALQ KKLFGKGASE KKEKVKALTE VKNNTRTLAM VLRSERELLS INKEQEQQVS QLKQMLEDKN KEVEKLKDLC LKQREEIKSL KSAILFPDVM
201: NSQLQELLEK QGSELKQAKQ VIPALQQQVS SLTGQLQSLA EDLAEVKADK YSAKAGLPGY GSSPRTPTHA REDASNFWEF SSDDLSDDLL LNDLNPCLTP
301: CAVKSRSREF ECRGSGSMHY ESLSDEDDAK VYPEMSFSSH DRKFSKSSDC CHNSSKISVA TKAGRRSDES KLAYGGRMNH KFV

Best Arabidopsis Sequence Match ( AT4G17240.1 )
(BLAST)

001: MASRYNSYDS RSSVTSSIHS DLSSSAEFKS NKPISSKAIV RSKSSYLTKT TKPIKPDSNP GNLTNMMKKL MEMKKSNSKS KRVELVIPEE LKKIDTGKGG
101: GKSTLGTLQR KLFGKEKVKA LTEVKSNTRT LSMVLRSERE LLGMNKDQEV EIAELKFQLE EKNREVEKLK DLCLKQREEI KSLKSAVLFP DSMNSQINQM
201: QELNQAREII PNLQKQVISL NGQLQCIAQD LAEVKANKYL SESCYWQAQT SSYDSLEFSS GSPDGLALED LNPCLTPYTK KKPKEYERVD SAEESLSGRS
301: TITTTGGKVK SSSRSVKMSR SSEGKAGQRS EESKGWYRGG RMF

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: A /.../- 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). [Source:TAIR;Acc:AT4G17240]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.