Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063187 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G17240.1 | PGSC0003DMT400063187 | AT3G48100.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g014850.2.1 | Tomato | plastid | 92.45 | 92.45 |
| PGSC0003DMT400034766 | Potato | nucleus, plastid | 64.58 | 64.08 |
| VIT_00s0508g00040.t01 | Wine grape | plastid | 55.99 | 53.22 |
| KRH36578 | Soybean | plastid | 49.48 | 49.61 |
| KRH11556 | Soybean | nucleus, plastid | 49.74 | 49.35 |
| Bra026238.1-P | Field mustard | nucleus, plastid | 42.19 | 48.8 |
| CDY35588 | Canola | nucleus, plastid | 42.19 | 48.36 |
| CDY42970 | Canola | nucleus, plastid | 41.93 | 48.2 |
| AT4G17240.1 | Thale cress | nucleus, plastid | 42.97 | 48.1 |
| GSMUA_Achr2P21490_001 | Banana | plastid | 36.72 | 47.0 |
| Os05t0547100-01 | Rice | plastid | 17.19 | 45.52 |
| HORVU5Hr1G095310.1 | Barley | plastid | 33.07 | 45.04 |
| GSMUA_Achr11P... | Banana | plastid | 30.21 | 44.62 |
| Os03t0750900-00 | Rice | plastid | 25.26 | 44.5 |
| CDY16233 | Canola | cytosol | 14.32 | 42.97 |
| Bra030205.1-P | Field mustard | plastid | 27.08 | 40.78 |
| TraesCS5B01G395300.1 | Wheat | nucleus, plastid | 38.02 | 40.78 |
| TraesCS5A01G390400.1 | Wheat | nucleus, plastid | 37.76 | 40.39 |
| TraesCS5D01G400200.1 | Wheat | nucleus | 37.5 | 40.11 |
| Zm00001d036633_P002 | Maize | cytosol, plastid | 11.46 | 38.6 |
| EER90867 | Sorghum | plastid | 38.02 | 36.59 |
| GSMUA_Achr2P21500_001 | Banana | extracellular | 13.8 | 33.54 |
| Zm00001d021076_P001 | Maize | cytosol, plastid | 15.62 | 29.7 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400060552 | EnsemblPlantsGene:PGSC0003DMG400023555 | EntrezGene:102603270 | ncoils:Coil | PANTHER:PTHR35493 | PGSC:PGSC0003DMG400023555 |
| RefSeq:XP_006346783.1 | SEG:seg | UniParc:UPI0002950482 | UniProt:M1C630 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400023555]
Coordinates
chr4:-:8854238..8858780
Molecular Weight (calculated)
42787.7 Da
IEP (calculated)
9.341
GRAVY (calculated)
-0.757
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MASIKPSYRY ANAATSSIDS LRSSSKSDPS SSTDLSPRPH NPHSLSRALT LPHAPSTTRH NFGSLVKKLV EHKSGPSIKS KPKGELKLIV PVDFVAKRGN
101: GLSALHKKLF KGVVKRDEGS EKKKKALTEV KANTRSLAMV LRSERELLSM NKEQENEIDE LKLKIEEKNK EVEKLKDLCL KQREEIKSLK NAVLFPDVLN
201: SQLQELVEKQ GSELKQANQL IPSLQKQVTS LTGQLQCLAY DLAEVKAEKY SLRGCYDSLD SSPRSPEYDQ EEAGNSLEFC SENTISPGSP DDMLLKDLNP
301: CLTPYSAKTK SKEFEFNSPD DKNLLRNNIQ VYHDTSYSYN SCASKVSKSS GCCQSSKAAN NSIRAACGSD ESKYTYRKQI HKMF
101: GLSALHKKLF KGVVKRDEGS EKKKKALTEV KANTRSLAMV LRSERELLSM NKEQENEIDE LKLKIEEKNK EVEKLKDLCL KQREEIKSLK NAVLFPDVLN
201: SQLQELVEKQ GSELKQANQL IPSLQKQVTS LTGQLQCLAY DLAEVKAEKY SLRGCYDSLD SSPRSPEYDQ EEAGNSLEFC SENTISPGSP DDMLLKDLNP
301: CLTPYSAKTK SKEFEFNSPD DKNLLRNNIQ VYHDTSYSYN SCASKVSKSS GCCQSSKAAN NSIRAACGSD ESKYTYRKQI HKMF
001: MASRYNSYDS RSSVTSSIHS DLSSSAEFKS NKPISSKAIV RSKSSYLTKT TKPIKPDSNP GNLTNMMKKL MEMKKSNSKS KRVELVIPEE LKKIDTGKGG
101: GKSTLGTLQR KLFGKEKVKA LTEVKSNTRT LSMVLRSERE LLGMNKDQEV EIAELKFQLE EKNREVEKLK DLCLKQREEI KSLKSAVLFP DSMNSQINQM
201: QELNQAREII PNLQKQVISL NGQLQCIAQD LAEVKANKYL SESCYWQAQT SSYDSLEFSS GSPDGLALED LNPCLTPYTK KKPKEYERVD SAEESLSGRS
301: TITTTGGKVK SSSRSVKMSR SSEGKAGQRS EESKGWYRGG RMF
101: GKSTLGTLQR KLFGKEKVKA LTEVKSNTRT LSMVLRSERE LLGMNKDQEV EIAELKFQLE EKNREVEKLK DLCLKQREEI KSLKSAVLFP DSMNSQINQM
201: QELNQAREII PNLQKQVISL NGQLQCIAQD LAEVKANKYL SESCYWQAQT SSYDSLEFSS GSPDGLALED LNPCLTPYTK KKPKEYERVD SAEESLSGRS
301: TITTTGGKVK SSSRSVKMSR SSEGKAGQRS EESKGWYRGG RMF
Arabidopsis Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: A /.../- 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). [Source:TAIR;Acc:AT4G17240]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.