Factsheet for Bra026238.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018084.1-P
Bra019524.1-P
Bra033773.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17240.1	Bra018084.1-P	AT3G48100.1	18642946
AT4G17240.1	Bra019524.1-P	AT3G48100.1	18642946
AT4G17240.1	Bra033773.1-P	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42970	Canola	nucleus, plastid	99.4	98.8
AT4G17240.1	Thale cress	nucleus, plastid	86.14	83.38
Bra030205.1-P	Field mustard	plastid	60.54	78.82
KRH36578	Soybean	plastid	50.9	44.13
KRH11556	Soybean	nucleus, plastid	51.2	43.93
Os05t0547100-01	Rice	plastid	18.98	43.45
Os03t0750900-00	Rice	plastid	28.31	43.12
VIT_00s0508g00040.t01	Wine grape	plastid	52.11	42.82
Solyc04g014850.2.1	Tomato	plastid	49.1	42.45
Solyc11g012610.1.1	Tomato	nucleus, plastid	49.1	42.23
PGSC0003DMT400060552	Potato	nucleus, plastid	48.8	42.19
PGSC0003DMT400034766	Potato	nucleus, plastid	47.89	41.09
GSMUA_Achr11P...	Banana	plastid	30.12	38.46
GSMUA_Achr2P21490_001	Banana	plastid	34.64	38.33
HORVU5Hr1G095310.1	Barley	plastid	32.53	38.3
TraesCS5A01G390400.1	Wheat	nucleus, plastid	38.86	35.93
TraesCS5B01G395300.1	Wheat	nucleus, plastid	38.55	35.75
TraesCS5D01G400200.1	Wheat	nucleus	38.25	35.38
EER90867	Sorghum	plastid	39.76	33.08
Zm00001d036633_P002	Maize	cytosol, plastid	11.14	32.46
Zm00001d021076_P001	Maize	cytosol, plastid	15.06	24.75
GSMUA_Achr2P21500_001	Banana	extracellular	11.45	24.05

Protein Annotations

EnsemblPlants:Bra026238.1	EnsemblPlants:Bra026238.1-P	EnsemblPlantsGene:Bra026238	ncoils:Coil	PANTHER:PTHR35493	SEG:seg
UniParc:UPI000254413F	UniProt:M4EBS9	MapMan:35.2	:	:	:

Description

AT4G17240 (E=1e-135) | unknown protein

Coordinates

chrA01:+:10470994..10472853

Molecular Weight (calculated)

37003.2 Da

IEP (calculated)

10.054

GRAVY (calculated)

-0.759

Length

332 amino acids

Sequence
(BLAST)

001: MAARYNSYDS RSSVSSSIQS DPSSSAEFKS SKAIVRSKPS YLTKTAKHDT NPGNLTCMMK KLMDMKKSNP KGKRVELVIP HELKKLDTVR GGGKGALGTL
101: QRKLFGKEKV KALTEVKGNT RTLSMVLRSE RELLSMNKDQ EIEISELKFQ LEEKNREVEK LKDLCLKQRE EIKSLKSALL FPDGMNSEMQ ELNEARQIIP
201: NLQKQVLSLN GQLQCIAQDL AEVKANKYIS ESCYWQAQTS SYDSLEFSSG SPDRLALEDL NPCLTPYAKI KPKEFARVDS AEESLSGRST VTNTGGKGKS
301: SSKSVKMSRS SEGKAGHRSE ESTGWHRGGR MF

Best Arabidopsis Sequence Match ( AT4G17240.1 )
(BLAST)

001: MASRYNSYDS RSSVTSSIHS DLSSSAEFKS NKPISSKAIV RSKSSYLTKT TKPIKPDSNP GNLTNMMKKL MEMKKSNSKS KRVELVIPEE LKKIDTGKGG
101: GKSTLGTLQR KLFGKEKVKA LTEVKSNTRT LSMVLRSERE LLGMNKDQEV EIAELKFQLE EKNREVEKLK DLCLKQREEI KSLKSAVLFP DSMNSQINQM
201: QELNQAREII PNLQKQVISL NGQLQCIAQD LAEVKANKYL SESCYWQAQT SSYDSLEFSS GSPDGLALED LNPCLTPYTK KKPKEYERVD SAEESLSGRS
301: TITTTGGKVK SSSRSVKMSR SSEGKAGQRS EESKGWYRGG RMF

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: A /.../- 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). [Source:TAIR;Acc:AT4G17240]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.