Factsheet for Solyc11g012610.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17240.1	Solyc03g113720.2.1	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034766	Potato	nucleus, plastid	94.56	94.32
Solyc04g014850.2.1	Tomato	plastid	64.51	64.84
VIT_00s0508g00040.t01	Wine grape	plastid	61.14	58.42
KRH36578	Soybean	plastid	53.63	54.05
KRH11556	Soybean	nucleus, plastid	53.37	53.23
CDY35588	Canola	nucleus, plastid	42.75	49.25
CDY42970	Canola	nucleus, plastid	42.49	49.1
Bra026238.1-P	Field mustard	nucleus, plastid	42.23	49.1
AT4G17240.1	Thale cress	nucleus, plastid	43.26	48.69
GSMUA_Achr2P21490_001	Banana	plastid	36.53	47.0
GSMUA_Achr11P...	Banana	plastid	29.79	44.23
HORVU5Hr1G095310.1	Barley	plastid	31.61	43.26
Os03t0750900-00	Rice	plastid	24.35	43.12
Os05t0547100-01	Rice	plastid	16.06	42.76
Bra030205.1-P	Field mustard	plastid	28.24	42.75
CDY16233	Canola	cytosol	13.99	42.19
TraesCS5B01G395300.1	Wheat	nucleus, plastid	36.27	39.11
TraesCS5A01G390400.1	Wheat	nucleus, plastid	36.01	38.72
TraesCS5D01G400200.1	Wheat	nucleus	35.23	37.88
Zm00001d036633_P002	Maize	cytosol, plastid	11.14	37.72
EER90867	Sorghum	plastid	36.01	34.84
GSMUA_Achr2P21500_001	Banana	extracellular	14.25	34.81
Zm00001d021076_P001	Maize	cytosol, plastid	14.77	28.22

Protein Annotations

EnsemblPlants:Solyc11g012610.1.1	EnsemblPlantsGene:Solyc11g012610.1	ncoils:Coil	PANTHER:PTHR35493	SEG:seg	UniParc:UPI000276A0FC
UniProt:K4D665	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr11:-:5392826..5396227

Molecular Weight (calculated)

43140.0 Da

IEP (calculated)

9.618

GRAVY (calculated)

-0.828

Length

386 amino acids

Sequence
(BLAST)

001: MSLIKPSSRY AKTSFDSSRS STKSDPSSST DKALIKIKKG SNGVTQTTHQ SNFSSMVKKF VEHKSASSKL MKQQQQKKGD LKLVIPVDFI AEDLKKTAKR
101: GSGLSSLHKK LFKGSSSGGG VKKEEGSTVK ALTEVKGNTR TLGMVLRSER ELLSMNKEQE DQIVELKLML EEKNREVEKL KDLCLKQREE IKSLKNSILF
201: PDVMNSQVQD LLEKQGSELK QAKQLIPNLQ RQVTSLTGQL QCLAEDLAEV KADKYAIRGS YDSFGSPSEY DQEEAANSLE FSSEDHTIPG SPDDMFLKDV
301: NPCLTPYYAK TKSKEFDDFN SPDAKDLVKN NIQVYHESSY NSCARKLSKS SDCRQCSNTG NKATRAARRS DESKCTYGKQ VHSKFY

Best Arabidopsis Sequence Match ( AT4G17240.1 )
(BLAST)

001: MASRYNSYDS RSSVTSSIHS DLSSSAEFKS NKPISSKAIV RSKSSYLTKT TKPIKPDSNP GNLTNMMKKL MEMKKSNSKS KRVELVIPEE LKKIDTGKGG
101: GKSTLGTLQR KLFGKEKVKA LTEVKSNTRT LSMVLRSERE LLGMNKDQEV EIAELKFQLE EKNREVEKLK DLCLKQREEI KSLKSAVLFP DSMNSQINQM
201: QELNQAREII PNLQKQVISL NGQLQCIAQD LAEVKANKYL SESCYWQAQT SSYDSLEFSS GSPDGLALED LNPCLTPYTK KKPKEYERVD SAEESLSGRS
301: TITTTGGKVK SSSRSVKMSR SSEGKAGQRS EESKGWYRGG RMF

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: A /.../- 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). [Source:TAIR;Acc:AT4G17240]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.