Factsheet for VIT_01s0026g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26830.1	VIT_17s0000g07580.t01	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0015g00470.t01	Wine grape	cytosol	95.92	95.92
CDY19754	Canola	cytosol	70.12	78.98
KRH69521	Soybean	endoplasmic reticulum, nucleus	80.61	77.89
KRH74628	Soybean	endoplasmic reticulum	79.88	76.43
Bra036596.1-P	Field mustard	mitochondrion	76.82	74.54
Bra009922.1-P	Field mustard	mitochondrion	77.11	73.68
CDX88245	Canola	mitochondrion	77.11	73.68
AT5G26830.1	Thale cress	mitochondrion	75.36	72.92
CDX87030	Canola	mitochondrion, plastid	76.38	72.88
CDX80596	Canola	extracellular	75.8	72.83
HORVU1Hr1G057910.4	Barley	cytosol	42.13	72.61
Zm00001d027762_P001	Maize	cytosol	22.89	72.02
TraesCS3B01G080400.1	Wheat	golgi, unclear	74.05	71.95
PGSC0003DMT400097200	Potato	cytosol, mitochondrion	43.29	71.91
TraesCS3D01G066900.1	Wheat	mitochondrion	73.91	71.61
TraesCS3A01G067300.1	Wheat	mitochondrion	73.62	71.33
TraesCS1B01G248400.1	Wheat	cytosol	61.08	71.02
HORVU3Hr1G012410.6	Barley	mitochondrion	74.49	70.39
Os08t0295300-01	Rice	golgi, plasma membrane	76.24	70.2
TraesCS1A01G235200.1	Wheat	cytosol	69.53	69.53
Zm00001d032667_P005	Maize	mitochondrion	74.34	69.2
TraesCS1D01G236900.1	Wheat	cytosol, mitochondrion	61.37	69.13
EER91117	Sorghum	mitochondrion	74.05	68.74
Bra031021.1-P	Field mustard	cytosol	56.56	67.24
CDY21715	Canola	cytosol	61.52	67.2
AT1G17960.1	Thale cress	cytosol	43.29	64.85
AT1G18130.1	Thale cress	cytosol	15.16	63.03
Zm00001d013607_P003	Maize	mitochondrion	73.62	61.74
Bra031009.1-P	Field mustard	cytosol	32.36	59.52
CDY21726	Canola	cytosol	37.46	58.95
CDX81854	Canola	cytosol	36.88	58.43
GSMUA_Achr1P18790_001	Banana	cytosol	19.68	49.45
Solyc07g064750.1.1	Tomato	cytosol	14.43	40.74
VIT_12s0057g00400.t01	Wine grape	plastid	34.69	34.95

Protein Annotations

KEGG:00970+6.1.1.3	EntrezGene:100265542	wikigene:100265542	MapMan:17.2.19	Gene3D:3.10.20.30	Gene3D:3.30.930.10
Gene3D:3.30.980.10	Gene3D:3.40.50.800	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	InterPro:Beta-grasp_dom_sf	ProteinID:CBI32119
ProteinID:CBI32119.3	UniProt:D7TNP6	EMBL:FN596002	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004812	GO:GO:0004829	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006435
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0043039
InterPro:IPR006195	InterPro:IPR012675	InterPro:IPR036621	EntrezGene:LOC100265542	wikigene:LOC100265542	HAMAP:MF_00184
PFAM:PF00587	PFAM:PF02824	PFAM:PF03129	PFAM:PF07973	PRINTS:PR01047	PFscan:PS50862
PANTHER:PTHR11451	PANTHER:PTHR11451:SF46	SMART:SM00863	SUPFAM:SSF52954	SUPFAM:SSF55186	SUPFAM:SSF55681
SUPFAM:SSF81271	TIGR:TC55418	InterPro:TGS	InterPro:TGS-like	TIGRFAMs:TIGR00418	InterPro:Thr-tRNA-ligase_IIa
InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core	UniParc:UPI0001982A0B	ArrayExpress:VIT_01s0026g00340	EnsemblPlantsGene:VIT_01s0026g00340	EnsemblPlants:VIT_01s0026g00340.t01
unigene:Vvi.2717	RefSeq:XP_002265302	RefSeq:XP_002265302.1	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg
InterPro:tRNA_SAD	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:9040563..9082759

Molecular Weight (calculated)

78471.5 Da

IEP (calculated)

6.707

GRAVY (calculated)

-0.431

Length

686 amino acids

Sequence
(BLAST)

001: MGGVPDPKSK PSHSHPKDDE YLSCVIPKRI AVFESIKAQQ IAHRQSISGD PIKITLPDGT VKEGKKWATT PLDIAREISK GLASNALISL VNGILWDMSR
101: PLEGDCELKL FTFDSDEGRD TFWHSSAHIL GQALEVAYGC KLCIGPCTTR GEGFYYDAFY GELGLNEDHF KEIESGALKA VGEKQPFERI EVSRNQALEL
201: FSENSFKIEI INDLPEDKTI TVYRCGPLVD LCRGPHIPNT SFVKAFACLK ASSAYWRGNK DRESLQRVYG ISYPDSKRLK EYIARIEEAK KYDHRLLGVK
301: QELFFCHPLS PGSWFFLPHG GRIYNKLMEF IKAQYRERGY HEVFSPTMYN MQLWETSGHA ANYKENMFVF EVEKQEFGLK PMNCPGHCLM FEHRVRSYRE
401: LPLRLADFGV LHRNEASGAL TGLTRVRRFQ QDDAHIFCRE SQIKDEVMGV LEFINYAYNI FGFTYELKLS TRPEKYLGDL ETWEKAEAAL TEALDQSGKP
501: WEINEGDGAF YGPKIDISVS DALSRKFQCA TLQLDFQLPS RFDLSYSAED EAKRERPVMI HRAILGSVER MFAILLEHYK GKWPFWLSPR QAIVCPVSEK
601: SQPYALKVRD QIHQAGYYVD VDTTDRKIQK KVREAQLAQY NYILVVGEEE ANTGQVSVRV RDKGDHSVMS MENLLSFFKS EIAAFH

Best Arabidopsis Sequence Match ( AT5G26830.1 )
(BLAST)

001: MLLRLTARSI RRFTTSSSSL PLLSSSSFCT VPTMAANHPK DEAYLSAVIP KRIKLFEQIQ ANQLENLKSL PHDPIKVTLP DGNVKEGKKW ETTPMDIAAQ
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV

Arabidopsis Description

THRRSThreonine--tRNA ligase, mitochondrial 1 [Source:UniProtKB/Swiss-Prot;Acc:O04630]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.