CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY21807
CDY36905
CDY54257
CDY59856
CDY68129
CDY70164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26830.1	CDY21807	AT3G48100.1	18642946
AT5G26830.1	CDY36905	AT3G48100.1	18642946
AT5G26830.1	CDY54257	AT3G48100.1	18642946
AT5G26830.1	CDY59856	AT3G48100.1	18642946
AT5G26830.1	CDY68129	AT3G48100.1	18642946
AT5G26830.1	CDY70164	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009922.1-P	Field mustard	mitochondrion	100.0	100.0
CDX80596	Canola	extracellular	92.9	93.42
CDY19754	Canola	cytosol	79.11	93.27
CDX87030	Canola	mitochondrion, plastid	87.19	87.07
AT5G26830.1	Thale cress	mitochondrion	82.17	83.22
VIT_01s0026g00340.t01	Wine grape	cytosol	73.68	77.11
VIT_19s0015g00470.t01	Wine grape	cytosol	73.26	76.68
KRH69521	Soybean	endoplasmic reticulum, nucleus	74.37	75.21
KRH74628	Soybean	endoplasmic reticulum	73.82	73.92
CDY21715	Canola	cytosol	62.67	71.66
TraesCS3D01G066900.1	Wheat	mitochondrion	67.13	68.08
TraesCS3A01G067300.1	Wheat	mitochondrion	66.99	67.94
HORVU1Hr1G057910.4	Barley	cytosol	37.6	67.84
TraesCS3B01G080400.1	Wheat	golgi, unclear	66.57	67.71
Zm00001d027762_P001	Maize	cytosol	20.47	67.43
HORVU3Hr1G012410.6	Barley	mitochondrion	67.69	66.94
Os08t0295300-01	Rice	golgi, plasma membrane	69.08	66.58
TraesCS1B01G248400.1	Wheat	cytosol	54.46	66.27
TraesCS1A01G235200.1	Wheat	cytosol	63.09	66.03
PGSC0003DMT400097200	Potato	cytosol, mitochondrion	37.74	65.62
Zm00001d032667_P005	Maize	mitochondrion	66.99	65.26
TraesCS1D01G236900.1	Wheat	cytosol, mitochondrion	55.15	65.02
EER91117	Sorghum	mitochondrion	66.71	64.82
CDY21726	Canola	cytosol	36.91	60.78
CDX81854	Canola	cytosol	36.49	60.51
Zm00001d013607_P003	Maize	mitochondrion	66.71	58.56
GSMUA_Achr1P18790_001	Banana	cytosol	17.69	46.52
Solyc07g064750.1.1	Tomato	cytosol	13.09	38.68
CDY50043	Canola	plastid	32.73	36.04
CDX93065	Canola	plastid	32.59	35.51

Protein Annotations

KEGG:00970+6.1.1.3	MapMan:17.2.19	Gene3D:3.10.20.30	Gene3D:3.30.930.10	Gene3D:3.30.980.10	Gene3D:3.40.50.800
GO:A0A078DGB0	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDX88245	ProteinID:CDX88245
ProteinID:CDX88245.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004829
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006435	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0043039	EnsemblPlantsGene:GSBRNA2T00147730001	InterPro:IPR006195
InterPro:IPR012675	InterPro:IPR036621	HAMAP:MF_00184	PFAM:PF00587	PFAM:PF02824	PFAM:PF03129
PFAM:PF07973	PRINTS:PR01047	PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF46	SMART:SM00863
SUPFAM:SSF52954	SUPFAM:SSF55186	SUPFAM:SSF55681	SUPFAM:SSF81271	InterPro:TGS	InterPro:TGS-like
TIGRFAMs:TIGR00418	InterPro:Thr-tRNA-ligase_IIa	InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core	UniParc:UPI000253F434	InterPro:aa-tRNA-synt_IIb
InterPro:aa-tRNA-synth_II	SEG:seg	InterPro:tRNA_SAD	:	:	:

Description

BnaA06g28360D

Coordinates

chrLK031854:+:1632098..1636438

Molecular Weight (calculated)

82293.1 Da

IEP (calculated)

7.253

GRAVY (calculated)

-0.479

Length

718 amino acids

Sequence
(BLAST)

001: MLLRLSARSI LRFTASHSHS YPPSPPPSRS ASLSSFCTVP SMAASNQKNE AYLSAVIPKR ITLFEQIQAD QLEKLKSLPH DPIKITLPDG SVKEGKKWET
101: TPMDIAAQIS KGLANSALIS SVNDELWDMS RPLEGDCKLE LFKFDSDKGR DTLWHSSAHI LGQAIEQEYG CKLCIGPCTT RGEGFYYDAC YEKDLGLNDN
201: HFPNIEAGAA KAAKEAQPFE RIEVTKDQAL EMFSENKFKI EIIKDLPADK TITVYRCGPL VDLCRGPHIP NTSFVKAFKC LRASSAYWRG DKERESLQRV
301: YGISYPDQKQ LKKYLQFLEE AKKYDHRLLG QKQELFFCHH LSPGSWFFLP LGTRVYNKLM EFIKEQYWKR GYTEVITPNM YNMNLWETSG HAANYKENMF
401: TFDIEKQEFG LKPMNCPGHC LMFQHRVRSY RELPIRLADF GVLHRNEASG ALSGLTRVRR FQQDDAHIFC TEDQVTEEVK AVLEFIDYAY KIFGFTYELK
501: LSTRPEKYLG DLATWDKAEN DLKVALDAFG KTWQLNEGDG AFYGPKIDIT VSDALNRKFQ CATLQLDFQL PDRFKLEYSG DDEAKRNRPV MIHRAVLGSV
601: ERMFAILLEH YKGKWPFWLS PRQAIVCPIS KKSEEYALKV KEQIHEAGYY VDADITDRKI DKKVREAQLA QYNYILVVGE TEAATGQVSV RIRDSAAHSV
701: KSIDDLLEEF KTKTAEYQ

Best Arabidopsis Sequence Match ( AT5G26830.1 )
(BLAST)

001: MLLRLTARSI RRFTTSSSSL PLLSSSSFCT VPTMAANHPK DEAYLSAVIP KRIKLFEQIQ ANQLENLKSL PHDPIKVTLP DGNVKEGKKW ETTPMDIAAQ
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV

Arabidopsis Description

THRRSThreonine--tRNA ligase, mitochondrial 1 [Source:UniProtKB/Swiss-Prot;Acc:O04630]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.