CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013607_P003	Maize	mitochondrion	95.53	86.31
Zm00001d027762_P001	Maize	cytosol	25.03	84.86
Os08t0295300-01	Rice	golgi, plasma membrane	84.3	83.62
TraesCS3B01G080400.1	Wheat	golgi, unclear	78.08	81.73
GSMUA_Achr1P18800_001	Banana	cytosol	56.97	81.27
TraesCS3D01G066900.1	Wheat	mitochondrion	77.81	81.21
TraesCS3A01G067300.1	Wheat	mitochondrion	77.4	80.79
HORVU3Hr1G012410.6	Barley	mitochondrion	76.59	77.96
HORVU1Hr1G057910.4	Barley	cytosol	40.87	75.88
TraesCS1B01G248400.1	Wheat	cytosol	60.22	75.42
VIT_19s0015g00470.t01	Wine grape	cytosol	68.88	74.2
VIT_01s0026g00340.t01	Wine grape	cytosol	68.74	74.05
TraesCS1A01G235200.1	Wheat	cytosol	68.47	73.76
Solyc08g074550.2.1	Tomato	plastid	67.39	73.67
TraesCS1D01G236900.1	Wheat	cytosol, mitochondrion	60.62	73.56
CDY19754	Canola	cytosol	58.59	71.1
KRH69521	Soybean	endoplasmic reticulum, nucleus	67.66	70.42
KRH74628	Soybean	endoplasmic reticulum	67.79	69.87
Solyc05g005800.2.1	Tomato	plastid	68.2	69.52
PGSC0003DMT400097200	Potato	cytosol, mitochondrion	38.02	68.04
CDX88245	Canola	mitochondrion	64.82	66.71
Bra009922.1-P	Field mustard	mitochondrion	64.82	66.71
Bra036596.1-P	Field mustard	mitochondrion	63.33	66.2
CDX80596	Canola	extracellular	63.6	65.83
AT5G26830.1	Thale cress	mitochondrion	62.92	65.59
CDX87030	Canola	mitochondrion, plastid	62.92	64.67
PGSC0003DMT400076047	Potato	cytosol	17.46	64.18
Bra031021.1-P	Field mustard	cytosol	48.85	62.56
CDY21715	Canola	cytosol	52.5	61.78
AT1G17960.1	Thale cress	cytosol	36.81	59.39
Bra031009.1-P	Field mustard	cytosol	27.88	55.23
CDY21726	Canola	cytosol	32.48	55.05
CDX81854	Canola	cytosol	32.21	54.97
AT1G18130.1	Thale cress	cytosol	11.77	52.73
Solyc07g064750.1.1	Tomato	cytosol	13.13	39.92
KXG36582	Sorghum	plastid	31.66	35.19

Protein Annotations

KEGG:00970+6.1.1.3	MapMan:17.2.19	Gene3D:3.10.20.30	Gene3D:3.30.930.10	Gene3D:3.30.980.10	Gene3D:3.40.50.800
EntrezGene:8057195	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	InterPro:Beta-grasp_dom_sf	UniProt:C5WQD6	EnsemblPlants:EER91117
ProteinID:EER91117	ProteinID:EER91117.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812
GO:GO:0004829	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006435	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0043039	InterPro:IPR006195
InterPro:IPR012675	InterPro:IPR036621	HAMAP:MF_00184	PFAM:PF00587	PFAM:PF02824	PFAM:PF03129
PFAM:PF07973	PRINTS:PR01047	PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF46	SMART:SM00863
EnsemblPlantsGene:SORBI_3001G145400	SUPFAM:SSF52954	SUPFAM:SSF55186	SUPFAM:SSF55681	SUPFAM:SSF81271	unigene:Sbi.330
InterPro:TGS	InterPro:TGS-like	TIGRFAMs:TIGR00418	InterPro:Thr-tRNA-ligase_IIa	InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core
UniParc:UPI0001A81FC6	RefSeq:XP_002464119.1	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	InterPro:tRNA_SAD

Description

hypothetical protein

Coordinates

chr1:+:11645342..11653710

Molecular Weight (calculated)

84475.3 Da

IEP (calculated)

7.228

GRAVY (calculated)

-0.361

Length

739 amino acids

Sequence
(BLAST)

001: MLECIRRGLL LVRQPTSRVL ARPYLHPARL FLQHFAADAM GEGSSAGKDA KGKGKGKAKA PAADSLLVAR DDSYLEAVTQ KRIRLFEEIQ ARQAVERLNI
101: GGEVIKVTLP DGAIKEGKKW ITTPMDIAKE ISSGFASSCL IAQVDETLWD MGRPLESDCK LQMFKFDTNE GRDTFWHSSA HILGESIERA YGCKLCIGPC
201: TTRGEGFYYD AYYKDQTLNE EHFGIIESQA KKAVAEKQPF ERIEVSRAEA LEMFAENEFK VEIINELPED KTITVYRCGP LVDLCRGPHI PNTSFVKAFA
301: CLKASSSYWR GKVDRESLQR VYGISFPDSR RLTEYKHFLE EAKKRDHRIL GKAQELFFFH ELSPGSCFFL PHGARIYNKL MDFMRQQYRA RGYQEVLSPN
401: MYNMQLWETS GHAANYKENM FVFEIEKQEF GLKPMNCPGH CLMFANRVRS YRELPLRMAD FGVLHRNELS GALTGLTRVR RFQQDDAHIF CREDQIKDEV
501: KAVLDFINYV YEIFGFKYEL ELSTRPEKYL GEIETWNKAE QQLTEALNEF GKPWKINEGD GAFYGPKIDI GVFDALKRKF QCATLQLDFQ LPIRFKLAYS
601: AEDEAKIERP VMIHRAILGS VERMFAILLE HYNGKWPLWL SPRQAIVCSV SSGSVEYAKQ VLATLHEAGF HADIDASDRT IQKKVREAQL AQFNYILVVG
701: AQEAETGNIC VRVRDNADLA TMSVDGFVTR LKEEIAAFR

Best Arabidopsis Sequence Match ( AT5G26830.1 )
(BLAST)

001: MLLRLTARSI RRFTTSSSSL PLLSSSSFCT VPTMAANHPK DEAYLSAVIP KRIKLFEQIQ ANQLENLKSL PHDPIKVTLP DGNVKEGKKW ETTPMDIAAQ
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV

Arabidopsis Description

THRRSThreonine--tRNA ligase, mitochondrial 1 [Source:UniProtKB/Swiss-Prot;Acc:O04630]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.