Factsheet for Zm00001d027762_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P18800_001	Banana	cytosol	77.52	32.63
HORVU1Hr1G057910.4	Barley	cytosol	51.38	28.14
EER91117	Sorghum	mitochondrion	84.86	25.03
Zm00001d032667_P005	Maize	mitochondrion	83.94	24.83
TraesCS1B01G248400.1	Wheat	cytosol	65.6	24.24
CDY19754	Canola	cytosol	66.97	23.97
TraesCS3B01G080400.1	Wheat	golgi, unclear	76.15	23.51
TraesCS3D01G066900.1	Wheat	mitochondrion	76.15	23.45
TraesCS3A01G067300.1	Wheat	mitochondrion	76.15	23.45
Os08t0295300-01	Rice	golgi, plasma membrane	79.82	23.36
VIT_01s0026g00340.t01	Wine grape	cytosol	72.02	22.89
VIT_19s0015g00470.t01	Wine grape	cytosol	72.02	22.89
HORVU3Hr1G012410.6	Barley	mitochondrion	76.15	22.86
Zm00001d013607_P003	Maize	mitochondrion	85.78	22.86
TraesCS1D01G236900.1	Wheat	cytosol, mitochondrion	63.76	22.82
Solyc08g074550.2.1	Tomato	plastid	69.72	22.49
KRH74628	Soybean	endoplasmic reticulum	70.18	21.34
KRH69521	Soybean	endoplasmic reticulum, nucleus	69.27	21.27
TraesCS1A01G235200.1	Wheat	cytosol	66.06	20.99
Solyc05g005800.2.1	Tomato	plastid	69.72	20.97
Bra036596.1-P	Field mustard	mitochondrion	67.89	20.93
CDX80596	Canola	extracellular	67.43	20.59
CDX87030	Canola	mitochondrion, plastid	67.89	20.58
PGSC0003DMT400097200	Potato	cytosol, mitochondrion	38.99	20.58
Bra009922.1-P	Field mustard	mitochondrion	67.43	20.47
CDX88245	Canola	mitochondrion	67.43	20.47
AT5G26830.1	Thale cress	mitochondrion	65.6	20.17
Bra031009.1-P	Field mustard	cytosol	33.95	19.84
CDY21715	Canola	cytosol	49.54	17.2
CDX81854	Canola	cytosol	33.95	17.09
CDY21726	Canola	cytosol	33.95	16.97
Bra031021.1-P	Field mustard	cytosol	37.61	14.21
Solyc07g064750.1.1	Tomato	cytosol	13.3	11.93
Zm00001d021962_P001	Maize	plastid	27.06	9.29
AT1G18130.1	Thale cress	cytosol	2.75	3.64
AT1G17960.1	Thale cress	cytosol	4.13	1.97
PGSC0003DMT400076047	Potato	cytosol	0.0	0.0

Protein Annotations

KEGG:00970+6.1.1.3	Gene3D:3.30.930.10	Gene3D:3.30.980.10	MapMan:50.6.1	UniProt:A0A1D6JPE4	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004829	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006435	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874
GO:GO:0019538	GO:GO:0043039	InterPro:IPR006195	ProteinID:ONL93878.1	PFAM:PF07973	PFscan:PS50862
PANTHER:PTHR11451	PANTHER:PTHR11451:SF46	SMART:SM00863	SUPFAM:SSF55186	SUPFAM:SSF55681	InterPro:Thr-tRNA-ligase_IIa
InterPro:Thr/Ala-tRNA-synth_IIc_edit	UniParc:UPI000843AEA6	EnsemblPlantsGene:Zm00001d027762	EnsemblPlants:Zm00001d027762_P001	EnsemblPlants:Zm00001d027762_T001	InterPro:aa-tRNA-synth_II
InterPro:tRNA_SAD	:	:	:	:	:

Description

Threonine--tRNA ligase mitochondrial 1

Coordinates

chr1:+:13028955..13030569

Molecular Weight (calculated)

25457.7 Da

IEP (calculated)

9.045

GRAVY (calculated)

-0.473

Length

218 amino acids

Sequence
(BLAST)

001: MNELPEDKSI TVYRCGPLVD LCRGPHIPNT SFVKAFACLK ASSSYWRGKV DRESLKRVYG ISFPDSRRLT EYKHFLEEAK KRDHQILGKA HELFFFHELG
101: PGSCFFLPRG ARIYNKLMDF MRQQYRDRGY QEVLSPNIYN MQLWETSGHV ANYKENMFVF ESQKQEFGLK PMNCPGHCLM FANRVRSYRG EFLPNFCILS
201: VLSERAKGPL AELVRCSE

Best Arabidopsis Sequence Match ( AT5G26830.1 )
(BLAST)

001: MLLRLTARSI RRFTTSSSSL PLLSSSSFCT VPTMAANHPK DEAYLSAVIP KRIKLFEQIQ ANQLENLKSL PHDPIKVTLP DGNVKEGKKW ETTPMDIAAQ
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV

Arabidopsis Description

THRRSThreonine--tRNA ligase, mitochondrial 1 [Source:UniProtKB/Swiss-Prot;Acc:O04630]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.