Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400097200 | Potato | cytosol, mitochondrion | 52.12 | 20.82 |
| AT1G17960.1 | Thale cress | cytosol | 56.97 | 20.52 |
| Bra031021.1-P | Field mustard | cytosol | 62.42 | 17.85 |
| CDY21715 | Canola | cytosol | 63.03 | 16.56 |
| VIT_01s0026g00340.t01 | Wine grape | cytosol | 63.03 | 15.16 |
| KRH69521 | Soybean | endoplasmic reticulum, nucleus | 64.24 | 14.93 |
| VIT_19s0015g00470.t01 | Wine grape | cytosol | 61.82 | 14.87 |
| KRH74628 | Soybean | endoplasmic reticulum | 63.64 | 14.64 |
| AT5G26830.1 | Thale cress | mitochondrion | 59.39 | 13.82 |
| TraesCS1B01G248400.1 | Wheat | cytosol | 46.67 | 13.05 |
| TraesCS1D01G236900.1 | Wheat | cytosol, mitochondrion | 47.27 | 12.81 |
| TraesCS3B01G080400.1 | Wheat | golgi, unclear | 52.73 | 12.32 |
| TraesCS3D01G066900.1 | Wheat | mitochondrion | 52.73 | 12.29 |
| TraesCS3A01G067300.1 | Wheat | mitochondrion | 52.12 | 12.15 |
| TraesCS1A01G235200.1 | Wheat | cytosol | 50.3 | 12.1 |
| Os08t0295300-01 | Rice | golgi, plasma membrane | 54.55 | 12.08 |
| HORVU3Hr1G012410.6 | Barley | mitochondrion | 52.73 | 11.98 |
| Zm00001d032667_P005 | Maize | mitochondrion | 53.33 | 11.94 |
| EER91117 | Sorghum | mitochondrion | 52.73 | 11.77 |
| Solyc07g064750.1.1 | Tomato | cytosol | 16.36 | 11.11 |
| Zm00001d013607_P003 | Maize | mitochondrion | 51.52 | 10.39 |
| AT2G04842.1 | Thale cress | plastid | 30.91 | 7.85 |
| Zm00001d027762_P001 | Maize | cytosol | 3.64 | 2.75 |
| GSMUA_Achr1P18790_001 | Banana | cytosol | 4.24 | 2.56 |
| HORVU1Hr1G057910.4 | Barley | cytosol | 1.82 | 0.75 |
Protein Annotations
| KEGG:00970+6.1.1.3 | Gene3D:3.30.930.10 | Gene3D:3.40.50.800 | MapMan:50.6.1 | EntrezGene:838392 | ProteinID:AEE29677.1 |
| ArrayExpress:AT1G18130 | EnsemblPlantsGene:AT1G18130 | RefSeq:AT1G18130 | TAIR:AT1G18130 | RefSeq:AT1G18130-TAIR-G | EnsemblPlants:AT1G18130.1 |
| TAIR:AT1G18130.1 | InterPro:Anticodon-bd | InterPro:Anticodon-bd_dom_sf | Unigene:At.51659 | UniProt:F4IAM7 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004829 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006435 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0019538 | InterPro:IPR036621 | RefSeq:NP_173251.1 | PFAM:PF03129 | PO:PO:0009025 | PRINTS:PR01047 |
| PANTHER:PTHR11451 | SUPFAM:SSF52954 | SUPFAM:SSF55681 | InterPro:Thr-tRNA-ligase_IIa | UniParc:UPI0000162DE0 | : |
Description
Class II aaRS and biotin synthetases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAM7]
Coordinates
chr1:+:6235895..6238799
Molecular Weight (calculated)
19206.5 Da
IEP (calculated)
4.618
GRAVY (calculated)
-0.471
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKNHPDEDE TNLSSAVDFH LRDRFKLEYS AENETMIERS VLIHRAVLSS VERLFAILLE QYKGKFPFWL SPRQAIVCSV SEDYRSYADK VRDQIHEAGY
101: YVDVDTTDRN VSDKVQEAQV AHYNYILVVG DEEARTGQVT VWLRDEMMSI ETLSDEFKLK TANFL
101: YVDVDTTDRN VSDKVQEAQV AHYNYILVVG DEEARTGQVT VWLRDEMMSI ETLSDEFKLK TANFL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.