Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G18130.1 | Thale cress | cytosol | 20.52 | 56.97 |
| AT5G26830.1 | Thale cress | mitochondrion | 69.65 | 44.99 |
| VIT_19s0015g00470.t01 | Wine grape | cytosol | 65.28 | 43.59 |
| VIT_01s0026g00340.t01 | Wine grape | cytosol | 64.85 | 43.29 |
| KRH69521 | Soybean | endoplasmic reticulum, nucleus | 64.85 | 41.83 |
| PGSC0003DMT400097200 | Potato | cytosol, mitochondrion | 37.34 | 41.4 |
| KRH74628 | Soybean | endoplasmic reticulum | 63.97 | 40.86 |
| TraesCS1D01G236900.1 | Wheat | cytosol, mitochondrion | 53.93 | 40.56 |
| GSMUA_Achr1P18790_001 | Banana | cytosol | 23.36 | 39.19 |
| TraesCS1A01G235200.1 | Wheat | cytosol | 58.3 | 38.92 |
| TraesCS3B01G080400.1 | Wheat | golgi, unclear | 59.83 | 38.81 |
| TraesCS3A01G067300.1 | Wheat | mitochondrion | 59.83 | 38.7 |
| TraesCS3D01G066900.1 | Wheat | mitochondrion | 59.83 | 38.7 |
| HORVU3Hr1G012410.6 | Barley | mitochondrion | 60.26 | 38.02 |
| Zm00001d032667_P005 | Maize | mitochondrion | 60.7 | 37.72 |
| TraesCS1B01G248400.1 | Wheat | cytosol | 48.25 | 37.46 |
| Os08t0295300-01 | Rice | golgi, plasma membrane | 60.7 | 37.32 |
| EER91117 | Sorghum | mitochondrion | 59.39 | 36.81 |
| HORVU1Hr1G057910.4 | Barley | cytosol | 28.6 | 32.91 |
| Zm00001d013607_P003 | Maize | mitochondrion | 58.73 | 32.89 |
| AT2G04842.1 | Thale cress | plastid | 32.53 | 22.92 |
| Solyc07g064750.1.1 | Tomato | cytosol | 12.01 | 22.63 |
| Zm00001d027762_P001 | Maize | cytosol | 1.97 | 4.13 |
Protein Annotations
| KEGG:00970+6.1.1.3 | MapMan:17.2.19 | Gene3D:3.10.20.30 | Gene3D:3.30.930.10 | Gene3D:3.40.50.800 | EntrezGene:838375 |
| ProteinID:AAF97275.1 | ProteinID:AEE29656.1 | EMBL:AK117218 | ArrayExpress:AT1G17960 | EnsemblPlantsGene:AT1G17960 | RefSeq:AT1G17960 |
| TAIR:AT1G17960 | RefSeq:AT1G17960-TAIR-G | EnsemblPlants:AT1G17960.1 | TAIR:AT1G17960.1 | InterPro:Anticodon-bd | InterPro:Anticodon-bd_dom_sf |
| InterPro:Beta-grasp_dom_sf | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004812 | GO:GO:0004829 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006418 | GO:GO:0006435 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016874 | GO:GO:0019538 | InterPro:IPR006195 | InterPro:IPR012675 |
| InterPro:IPR036621 | RefSeq:NP_173238.1 | PFAM:PF00587 | PFAM:PF02824 | PFAM:PF03129 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009052 | PRINTS:PR01047 | PFscan:PS50862 |
| PANTHER:PTHR11451 | PANTHER:PTHR11451:SF46 | UniProt:Q8GZ45 | SUPFAM:SSF52954 | SUPFAM:SSF55186 | SUPFAM:SSF55681 |
| SUPFAM:SSF81271 | InterPro:TGS | InterPro:TGS-like | InterPro:Thr-tRNA-ligase_IIa | InterPro:Thr/Ala-tRNA-synth_IIc_edit | UniParc:UPI000009E89E |
| InterPro:aa-tRNA-synt_IIb | InterPro:aa-tRNA-synth_II | SEG:seg | : | : | : |
Description
Probable threonine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ45]
Coordinates
chr1:-:6180865..6183806
Molecular Weight (calculated)
52439.3 Da
IEP (calculated)
4.868
GRAVY (calculated)
-0.409
Length
458 amino acids
Sequence
(BLAST)
(BLAST)
001: MANNHHPKDE AYLSSVIPKR IRLFEEIQAE QLEQLQSRPH DPIKITLLPD GIEKEGRRWE TSPMDIAVQI SKGLAKSALV SSVNHVLWDM NRPLEGDCSL
101: EIFGFDSDQG RNTFWHSSAH ILGQALEQEY GCKLCIGPCE PRDEGFYYDS LYYGELGLND NHFPNIEAKL PIRMAEFGVL HRNEDSGALG GMTRVRRFVQ
201: DDAHIFCRVD QVEEEVKGVL DFIDYVYRIF GFTYELTLST RPKDHIGDLE TWAKAENDLE KALDDFGKPW VIKEGDGAFY GPKIDITVSD ARNRKFQCAT
301: IQLDFQLPAC FKLKYLSEKN EMEAPVMIHS AVLGSIERMF AILLEHYKGI WPFWLSPRQA IVCSLSEDCS SYAKQVQKQI NEVGYYVDID ESDRSLRKKV
401: ADARDAPYNY ILVVGQKEVA TGQVTVRLRE DPEGRKDLPE MSIESLLDEF KFKTVNFL
101: EIFGFDSDQG RNTFWHSSAH ILGQALEQEY GCKLCIGPCE PRDEGFYYDS LYYGELGLND NHFPNIEAKL PIRMAEFGVL HRNEDSGALG GMTRVRRFVQ
201: DDAHIFCRVD QVEEEVKGVL DFIDYVYRIF GFTYELTLST RPKDHIGDLE TWAKAENDLE KALDDFGKPW VIKEGDGAFY GPKIDITVSD ARNRKFQCAT
301: IQLDFQLPAC FKLKYLSEKN EMEAPVMIHS AVLGSIERMF AILLEHYKGI WPFWLSPRQA IVCSLSEDCS SYAKQVQKQI NEVGYYVDID ESDRSLRKKV
401: ADARDAPYNY ILVVGQKEVA TGQVTVRLRE DPEGRKDLPE MSIESLLDEF KFKTVNFL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.