Factsheet for TraesCS1D01G236900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G235200.1	Wheat	cytosol	91.79	81.49
TraesCS1B01G248400.1	Wheat	cytosol	76.52	78.98
HORVU1Hr1G057910.4	Barley	cytosol	46.8	71.61
TraesCS3D01G066900.1	Wheat	mitochondrion	75.86	65.25
Os08t0295300-01	Rice	golgi, plasma membrane	78.65	64.3
GSMUA_Achr1P18800_001	Banana	cytosol	54.35	63.9
Zm00001d027762_P001	Maize	cytosol	22.82	63.76
Zm00001d032667_P005	Maize	mitochondrion	74.88	61.87
VIT_19s0015g00470.t01	Wine grape	cytosol	69.13	61.37
VIT_01s0026g00340.t01	Wine grape	cytosol	69.13	61.37
EER91117	Sorghum	mitochondrion	73.56	60.62
Solyc08g074550.2.1	Tomato	plastid	66.83	60.21
PGSC0003DMT400097200	Potato	cytosol, mitochondrion	40.56	59.81
CDY19754	Canola	cytosol	58.29	58.29
KRH69521	Soybean	endoplasmic reticulum, nucleus	67.65	58.03
KRH74628	Soybean	endoplasmic reticulum	67.65	57.46
Solyc05g005800.2.1	Tomato	plastid	67.0	56.28
Bra036596.1-P	Field mustard	mitochondrion	64.2	55.3
CDX88245	Canola	mitochondrion	65.02	55.15
Bra009922.1-P	Field mustard	mitochondrion	65.02	55.15
CDX80596	Canola	extracellular	64.37	54.9
Zm00001d013607_P003	Maize	mitochondrion	73.73	54.89
AT5G26830.1	Thale cress	mitochondrion	63.55	54.58
AT1G17960.1	Thale cress	cytosol	40.56	53.93
CDX87030	Canola	mitochondrion, plastid	63.55	53.82
Bra031021.1-P	Field mustard	cytosol	50.41	53.21
CDY21715	Canola	cytosol	54.35	52.71
PGSC0003DMT400076047	Potato	cytosol	16.09	48.76
CDY21726	Canola	cytosol	33.99	47.48
AT1G18130.1	Thale cress	cytosol	12.81	47.27
CDX81854	Canola	cytosol	33.0	46.42
Bra031009.1-P	Field mustard	cytosol	28.08	45.84
Solyc07g064750.1.1	Tomato	cytosol	15.44	38.68
TraesCS6D01G262800.1	Wheat	plastid	35.8	32.68

Protein Annotations

KEGG:00970+6.1.1.3	MapMan:17.2.19	Gene3D:3.10.20.30	Gene3D:3.30.930.10	Gene3D:3.30.980.10	Gene3D:3.40.50.800
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	InterPro:Beta-grasp_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004812	GO:GO:0004829	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006435
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0043039
InterPro:IPR006195	InterPro:IPR012675	InterPro:IPR036621	PFAM:PF00587	PFAM:PF02824	PFAM:PF03129
PFAM:PF07973	PRINTS:PR01047	PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF46	SMART:SM00863
SUPFAM:SSF52954	SUPFAM:SSF55186	SUPFAM:SSF55681	SUPFAM:SSF81271	InterPro:TGS	InterPro:TGS-like
InterPro:Thr-tRNA-ligase_IIa	InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core	EnsemblPlantsGene:TraesCS1D01G236900	EnsemblPlants:TraesCS1D01G236900.1	InterPro:aa-tRNA-synt_IIb
InterPro:aa-tRNA-synth_II	TIGR:cd00771	TIGR:cd00860	TIGR:cd01667	SEG:seg	InterPro:tRNA_SAD

Description

No Description!

Coordinates

chr1D:+:326155813..326167753

Molecular Weight (calculated)

69151.9 Da

IEP (calculated)

7.798

GRAVY (calculated)

-0.397

Length

609 amino acids

Sequence
(BLAST)

001: MGAKDKAQAR ARAPPPAVVP DEAYLEAVTG KRDRLFEQIL DRQARQRAQN GGSPIKITLH DGTVKEGKKW MSTPMDIAKE ISSGLAASCL IAQVNGGLWD
101: MTRPLEGDCE LNLLTFDSKE GRDTLWHSSA HILGEALKRV YGCKLFIGPC TARGEGFYYD AYYDNATLNG SPTLYRCGPL VDLCRGPHIP NTSFVKAFAC
201: LKASSSYWRG KADRESLQRV YGISFPHSKL LKEYQCMMEE AAERDHRLLG ESQKLFFFDS LSPGSCFFLP HGKKIVNKLK AFLRQKYRDR GYQEVESPTV
301: LKMKLWETSG HSANYKENMF VFEIDGEEFG LKPMYCPGHC IIFKHETRSY RELPLRIADF GVLHRNEASG ALSGLTRVRR FQQDDAHIFC RESQRPEKYL
401: GDIETWNKAE QQLAEALDEF GKPWEINEGD GAFYGPKIDI GVFDALKRKF QCATLQLDFA LPVRFKLTYA AEEEAKLERP VIIHRAILGS VERMFAILLE
501: HYCGKWPLWL SPRQAIVCSI SSDSLEYAKQ VHAKIHNAGF DVEIDMTDKK LPKKVYDAQL AQFNYILAVG PKEVESEMVT VRVRDKRELS TMSVDDLISL
601: LRDEVAAYR

Best Arabidopsis Sequence Match ( AT1G17960.1 )
(BLAST)

001: MANNHHPKDE AYLSSVIPKR IRLFEEIQAE QLEQLQSRPH DPIKITLLPD GIEKEGRRWE TSPMDIAVQI SKGLAKSALV SSVNHVLWDM NRPLEGDCSL
101: EIFGFDSDQG RNTFWHSSAH ILGQALEQEY GCKLCIGPCE PRDEGFYYDS LYYGELGLND NHFPNIEAKL PIRMAEFGVL HRNEDSGALG GMTRVRRFVQ
201: DDAHIFCRVD QVEEEVKGVL DFIDYVYRIF GFTYELTLST RPKDHIGDLE TWAKAENDLE KALDDFGKPW VIKEGDGAFY GPKIDITVSD ARNRKFQCAT
301: IQLDFQLPAC FKLKYLSEKN EMEAPVMIHS AVLGSIERMF AILLEHYKGI WPFWLSPRQA IVCSLSEDCS SYAKQVQKQI NEVGYYVDID ESDRSLRKKV
401: ADARDAPYNY ILVVGQKEVA TGQVTVRLRE DPEGRKDLPE MSIESLLDEF KFKTVNFL

Arabidopsis Description

Probable threonine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.